![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro02_G04415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 653aa MW: 72043.5 Da PI: 7.5198 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38 | 4.1e-12 | 295 | 351 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Ro02_G04415 295 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 351 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 50.6 | 4.9e-16 | 394 | 445 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g Ro02_G04415 394 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 445 57****************988532...5************************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 653 aa Download sequence |
MKPINDHNHN NNGSHNNNNN WLGFSLSAPH MKMEVTSSDP HHHYNHHQAQ ASSAASAQLP 60 SSFYNLTPLC YENGGFHSPL TVMPLKSDGS LCIMEALTRS QAEGMVPNSS PKLEDFLGGA 120 SMGAHDYGTQ QREAMALSLD SMYYNENAEA EQHYYSGIPF PGTYQTQMEE ESSKQTHIAG 180 SDSHQMTQNW VTRQYSAAHH ALNQQHMSNN NMVHHDNGGG SGSANGGMHC GDLQSLTLSM 240 SPGSQSSCVT APRQISPTET ECIAMETKKR GSGKISQTKQ PVHRKSIDTF GQRTSQYRGV 300 TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GSSTHINFPL 360 DDYTTQLEEM KNMNRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD 420 LYLGTFGTQE EAAEAYDIAA IKFRGVNAVT NFDITRYDVE KIMASNTLLA GEFARRNKEV 480 EPNNQVIEYN PSAQNNVEAN QPENSHGNSS DWKTALYQAA QQQQATATSV QTLDQKSMAS 540 GNYRSPASFS MALQDLIRVE SVNSSQQLMD ESAKSGAHFS NPSSLVTSLS SSREASPDKS 600 GPAMLFAKPP MASKFISPST AVAVSSWFPS AQLRPAAAIS MSHLPMFAAW SDT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-151 | AP2 family protein |