PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G04280

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 663aa MW: 73929.6 Da PI: 7.215

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G04280	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.8	9.5e-12	331	387	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g Ro01_G04280 331 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEQKAARAYDLAALKYWG 387 78*****************87776664446655.7799************98 PP
2	AP2	46	1.3e-14	432	481	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Ro01_G04280 432 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 481 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence
MKSMSNDNTN SSNNWLDFSL SPNMKMDVPP SDPHQISQSS SPSSIPNAFF NSPPHFNYGI 60 YYGVDQGDHT GLYSPLPMMP IKSDGSLCIM EALNRSHHPQ GMVTSSSSST PKLEDFFGGA 120 TMGTHNHYNN NDREAIALSL DSMFYQQIPT HHHHHEPNNN SQNLLNQEHE SQQQHYSSYY 180 SGLKTHEMMF QDHQKQQAQI ENYNNVQNPN VGSADHSISA MKSWVSRNFS DSSNNHGVLE 240 QNMIGCMGEN GAESAGSIGS MAYGDLQCLS LSMSPGSQSS CVTGTQQISP TLTSTDCVVT 300 MDSSKKRGPE KVEQKQIVHR KSLDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS 360 RKGRQGGYDM EQKAARAYDL AALKYWGPST HINFPLENYQ KELEEMKNMS RQEYVAHLRR 420 KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR 480 GLNAVTNFDI TRYDVDRIMA SNTLLAGDNA KRNKELPRPS DEATIQNHAT THISNGDHTI 540 TVALKNNSEV EEWKMMQLFQ SSQQVLDHQN VIQADHRAEE SAKMGTTTHL SNASSLVTSL 600 SSSREGSPDK SSLPSFFGMP PTASKFFTSS GTNNTVSSWI PAVQSRPGLS LPHMPIFTAW 660 TDA

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence

MKSMSNDNTN SSNNWLDFSL SPNMKMDVPP SDPHQISQSS SPSSIPNAFF NSPPHFNYGI  60
YYGVDQGDHT GLYSPLPMMP IKSDGSLCIM EALNRSHHPQ GMVTSSSSST PKLEDFFGGA  120
TMGTHNHYNN NDREAIALSL DSMFYQQIPT HHHHHEPNNN SQNLLNQEHE SQQQHYSSYY  180
SGLKTHEMMF QDHQKQQAQI ENYNNVQNPN VGSADHSISA MKSWVSRNFS DSSNNHGVLE  240
QNMIGCMGEN GAESAGSIGS MAYGDLQCLS LSMSPGSQSS CVTGTQQISP TLTSTDCVVT  300
MDSSKKRGPE KVEQKQIVHR KSLDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS  360
RKGRQGGYDM EQKAARAYDL AALKYWGPST HINFPLENYQ KELEEMKNMS RQEYVAHLRR  420
KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  480
GLNAVTNFDI TRYDVDRIMA SNTLLAGDNA KRNKELPRPS DEATIQNHAT THISNGDHTI  540
TVALKNNSEV EEWKMMQLFQ SSQQVLDHQN VIQADHRAEE SAKMGTTTHL SNASSLVTSL  600
SSSREGSPDK SSLPSFFGMP PTASKFFTSS GTNNTVSSWI PAVQSRPGLS LPHMPIFTAW  660
TDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-127	AP2 family protein