PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0215711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 191aa MW: 22001.1 Da PI: 9.3252 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 86 | 146 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ qle+Le+ + + n +p +++ +e++ +l ++te++V++WFqNrRa+ k+ RcHm_v2.0_Chr7g0215711 86 RQRWTPTSLQLEILERIYDEaNGTPGKHRVKEITIELsqhgQVTETNVYNWFQNRRARSKR 146 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 93.7 | 1.6e-30 | 85 | 148 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe++y+++ tP k+++++it eL+++G+++++NV++WFQNr+aR+++kq RcHm_v2.0_Chr7g0215711 85 ARQRWTPTSLQLEILERIYDEANGTPGKHRVKEITIELSQHGQVTETNVYNWFQNRRARSKRKQ 148 789***********************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence |
MEGQRRVLAM KMEKLKTQNP DGFCRKVMTD DQVEQLRKQI AVYAVICEQL VDMHKAFTAQ 60 QDLSGMKMGS VYGDLMASGG SKVTARQRWT PTSLQLEILE RIYDEANGTP GKHRVKEITI 120 ELSQHGQVTE TNVYNWFQNR RARSKRKQSV PARNITESDL EPEVISPKDK KTKPEDMYFQ 180 SPDSGYENLK W |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 148 | RRARSKRKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-60 | WOX family protein |