PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0188591
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LFY
Protein Properties Length: 413aa    MW: 45821.2 Da    PI: 6.6513
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0188591genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY604.32.5e-18413961386
                 FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap...leaaaaaaarklr......eleelfkayGvryltvakiaelGftvstL 78 
                             mdp+afsas+fkwd r +a++p+ r++ eaa+++++   ++aaaaaa +++r      +le++f+ayGvry+t+a+ia+lGftvstL
  RcHm_v2.0_Chr7g0188591   1 MDPDAFSASMFKWDLRGMAVPPS-RVQLEAAAVAPQqaaAAAAAAAAGYSVRgprevvGLEDMFRAYGVRYYTAARIADLGFTVSTL 86 
                             9**************98886655.5655555544442223334444455566999999***************************** PP

                 FLO_LFY  79 vdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsgg 165
                             +dmkdeeldd+m+s+s+ fr++llvGeryGikaa+raerrrleee+  ++rr+ ls d+ +a+dalsqeglseepvq+eke++gsgg
  RcHm_v2.0_Chr7g0188591  87 LDMKDEELDDMMNSVSQFFRVELLVGERYGIKAAIRAERRRLEEED--SRRRHSLSGDT-NAMDALSQEGLSEEPVQQEKEMVGSGG 170
                             ********************************************88..88888999996.68***********************99 PP

                 FLO_LFY 166 eglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeeg............sgedgeerqrehPfivtepge 240
                             +   ++e+v+a+ek+     kk ++ ++    ++++++  d+deeeee+ed+ +            ++ +g+erqrehPfivte+ge
  RcHm_v2.0_Chr7g0188591 171 GA--AWEVVTAAEKR-----KKLRRIRRGVGGHRSSNEGVDDDEEEEENEDGINggggehpnralaMRGGGRERQREHPFIVTEAGE 250
                             98..99999998433.....3332233333333333344444444444444443457888888888777889*************** PP

                 FLO_LFY 241 vargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafk 327
                             vargkknGLDYLf+LyeqC+efL+qvq+iak+rGekcPtkvtnqvfryakk ga+yinkPkmrhYvhCYalhcLdee snalrr+ k
  RcHm_v2.0_Chr7g0188591 251 VARGKKNGLDYLFHLYEQCHEFLTQVQNIAKQRGEKCPTKVTNQVFRYAKKEGANYINKPKMRHYVHCYALHCLDEEGSNALRRECK 337
                             *************************************************************************************** PP

                 FLO_LFY 328 ergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                              rgen+Gawrqacy+p+v+iaa qgwdida+f+ahp+Ls+WYvPtkLrqLCh+er++a+
  RcHm_v2.0_Chr7g0188591 338 LRGENIGAWRQACYRPVVEIAAGQGWDIDAIFSAHPQLSVWYVPTKLRQLCHAERNNAT 396
                             ********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    
MDPDAFSASM FKWDLRGMAV PPSRVQLEAA AVAPQQAAAA AAAAAAGYSV RGPREVVGLE  60
DMFRAYGVRY YTAARIADLG FTVSTLLDMK DEELDDMMNS VSQFFRVELL VGERYGIKAA  120
IRAERRRLEE EDSRRRHSLS GDTNAMDALS QEGLSEEPVQ QEKEMVGSGG GAAWEVVTAA  180
EKRKKLRRIR RGVGGHRSSN EGVDDDEEEE ENEDGINGGG GEHPNRALAM RGGGRERQRE  240
HPFIVTEAGE VARGKKNGLD YLFHLYEQCH EFLTQVQNIA KQRGEKCPTK VTNQVFRYAK  300
KEGANYINKP KMRHYVHCYA LHCLDEEGSN ALRRECKLRG ENIGAWRQAC YRPVVEIAAG  360
QGWDIDAIFS AHPQLSVWYV PTKLRQLCHA ERNNATASSS ASGGSGTADH LPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-100LFY family protein