PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0178511

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 386aa MW: 44655.9 Da PI: 8.7857

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0178511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.7	3.4e-22	89	148	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ RcHm_v2.0_Chr7g0178511 89 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 148 7***************99************************************97 PP
2	Wus_type_Homeobox	115.5	2.5e-37	88	150	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ RcHm_v2.0_Chr7g0178511 88 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 150 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MWMMGYNDGG DFNMIPDSAF NGRKLRPLVP RPLSSPHNNN NNNTSTSTHA PPCFSRIHAA 60 SDFLAQYHQL GEQRGMREFN TVPQVVVSSR WNPTPEQLRA LEELYRRGTR TPSAEQIQQI 120 TAQLRRYGKI EGKNVFYWFQ NHKARERQKR RRQMESHDDL QLMCSDHQKK ESLGGASRTV 180 YEVEETKNWA PSANCMTTSL QDQLHHQQET VKAGAESRTE AWVQFGEEEL QQLQQEQRRN 240 SMTVEKNARW QMMQLSCPPP PRLHDLTHLI NAPTCTRTTV RTMEMDQKQL INNRNNKTSP 300 PHDLSIFIAP YRSGAALNGR HLQQNQHRNE EEDISRGDQS QTLQLFPLRS STCGEKDHLT 360 TEKSLLNPSF GTGPNYQFFE FLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MWMMGYNDGG DFNMIPDSAF NGRKLRPLVP RPLSSPHNNN NNNTSTSTHA PPCFSRIHAA  60
SDFLAQYHQL GEQRGMREFN TVPQVVVSSR WNPTPEQLRA LEELYRRGTR TPSAEQIQQI  120
TAQLRRYGKI EGKNVFYWFQ NHKARERQKR RRQMESHDDL QLMCSDHQKK ESLGGASRTV  180
YEVEETKNWA PSANCMTTSL QDQLHHQQET VKAGAESRTE AWVQFGEEEL QQLQQEQRRN  240
SMTVEKNARW QMMQLSCPPP PRLHDLTHLI NAPTCTRTTV RTMEMDQKQL INNRNNKTSP  300
PHDLSIFIAP YRSGAALNGR HLQQNQHRNE EEDISRGDQS QTLQLFPLRS STCGEKDHLT  360
TEKSLLNPSF GTGPNYQFFE FLPLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	3e-55	WOX family protein