PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0080461

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 700aa MW: 77900.8 Da PI: 10.6701

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0080461	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.4e-09	11	44	2	36
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 ++W t E++llv av+++G+++W+++a+++ R+ RcHm_v2.0_Chr5g0080461 11 QPWGTLEELLLVSAVNRHGTKRWDSVAKEVK-SRS 44 79****************************9.887 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MASREHETSA QPWGTLEELL LVSAVNRHGT KRWDSVAKEV KSRSSTTTTA VFTAQNCRDK 60 FDDLKRRFVV SQQNDAESRS GDDDGLAFMV DELRRLRVEE LRREVRRRDV SIVSLELKVK 120 KMEEDRDRSL KAERPAPVKD LHRDGGGGGG EQSELPEKLA GKPNSGRDFV SDSSERENRS 180 FNESNSTSQR SEAKANGVVE KKRDADAEPG PERNQPDPVQ TETRSEPASA NGKVIDDDDD 240 DVDDKNDRQG GGGAEPTTTG RPGESNELSG SKRAVVKEVR KQNSDVQSSA SLTRRRKRRR 300 KGGDSSSGEE PEGGEEVSPA TTKRVKLVKL EPLVKVLRIV RSHRLGSVFQ RRLRSQESQR 360 YKNLIREHVD LKVVQSRLEK GAYNDCTHKF FRDLLLVFSN AVVFFRKTAP EHVAALELRL 420 LVLKEMNDQL PRPRPAVSTV KPKPNVESDI TTTTTSMRPS KSSSIVVCGK RGSINALSEN 480 KKGIVRKVEV EEKEAKVKVN GKKVEDSAPV KVEDKGVRKK RSAQERRGER RSRTTTTSNS 540 KNVEAKTKHE SGGNDVSMRD GLEAVKKEDV KKKQGAASFL KRMKQNGSRG VGRGKNSSDV 600 SEDESKDSMV DEEEEEEEEE KKKRTGRKKT EVERKVRVTR SSNGRRGGRG QESGGRGKRG 660 VGRPPKKTET AAAGSGKRGR DNGEADQVGS AGRPRKRTRR

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MASREHETSA QPWGTLEELL LVSAVNRHGT KRWDSVAKEV KSRSSTTTTA VFTAQNCRDK  60
FDDLKRRFVV SQQNDAESRS GDDDGLAFMV DELRRLRVEE LRREVRRRDV SIVSLELKVK  120
KMEEDRDRSL KAERPAPVKD LHRDGGGGGG EQSELPEKLA GKPNSGRDFV SDSSERENRS  180
FNESNSTSQR SEAKANGVVE KKRDADAEPG PERNQPDPVQ TETRSEPASA NGKVIDDDDD  240
DVDDKNDRQG GGGAEPTTTG RPGESNELSG SKRAVVKEVR KQNSDVQSSA SLTRRRKRRR  300
KGGDSSSGEE PEGGEEVSPA TTKRVKLVKL EPLVKVLRIV RSHRLGSVFQ RRLRSQESQR  360
YKNLIREHVD LKVVQSRLEK GAYNDCTHKF FRDLLLVFSN AVVFFRKTAP EHVAALELRL  420
LVLKEMNDQL PRPRPAVSTV KPKPNVESDI TTTTTSMRPS KSSSIVVCGK RGSINALSEN  480
KKGIVRKVEV EEKEAKVKVN GKKVEDSAPV KVEDKGVRKK RSAQERRGER RSRTTTTSNS  540
KNVEAKTKHE SGGNDVSMRD GLEAVKKEDV KKKQGAASFL KRMKQNGSRG VGRGKNSSDV  600
SEDESKDSMV DEEEEEEEEE KKKRTGRKKT EVERKVRVTR SSNGRRGGRG QESGGRGKRG  660
VGRPPKKTET AAAGSGKRGR DNGEADQVGS AGRPRKRTRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	300	RRRKRRR
2	295	301	RRRKRRR
3	296	300	RKRRR
4	518	548	RKKRSAQERRGERRSRTTTTSNSKNVEAKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	9e-27	MYB_related family protein