PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G44430.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 646aa    MW: 72405.5 Da    PI: 8.8544
Description DNA-binding bromodomain-containing protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G44430.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.3e-1448101248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                      ++W t+E++ll++avk++G g+W+++a ++        +  ++++c++++++++
      AT2G44430.1  48 QAWGTWEELLLACAVKRHGFGDWDSVATEVRsrsslshLLASANDCRHKYRDLK 101
                      79************************************99***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-640108IPR009057Homeodomain-like
PROSITE profilePS500906.06342101IPR017877Myb-like domain
SMARTSM007174.0E-846103IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-646104IPR009057Homeodomain-like
PfamPF002492.9E-1347101IPR001005SANT/Myb domain
CDDcd001671.16E-749101No hitNo description
Gene3DG3DSA:1.20.920.103.6E-17295446IPR001487Bromodomain
SMARTSM002972.2E-24301410IPR001487Bromodomain
SuperFamilySSF473701.31E-17303409IPR001487Bromodomain
CDDcd043694.16E-16312405No hitNo description
PfamPF004391.7E-11315390IPR001487Bromodomain
PROSITE profilePS5001412.526320383IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009030anatomycarpel
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0025281anatomypollen
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MRKEEEEEAG SYNMNVDDTN NNNNYICTDN DYIEEDEDNS NTKKSQTQAW GTWEELLLAC  60
AVKRHGFGDW DSVATEVRSR SSLSHLLASA NDCRHKYRDL KRRFHEQEKT DVTATVEEEE  120
EEEERVGNNI PWLEQLRNLR VAELRREVER YDCSILSLQL KVKKLEEERE VGEEKPDLEN  180
ERKEERSEND GSESEHREKA VSAAEESDRE NRSMNESNST ATAGEEERVC GDEPSQTRED  240
DSGNDKNPDP DPVNKDATAA EEEEGSVSRG SEASHSDELG ESGTSESKWK RKRRKQGGAG  300
EIRSAESKSQ PLISLLDLIR SHPRGSLFER RLRSQEAKDY KSMVKQHLDI ETIQRKLKQG  360
SYDSSSLIFY RDLQLLFTNA IVFFPLSSSE SMAAHELRAV VSQEMRKETG KAGPRLIKQE  420
ASGMRSGKAD AETSDSSLSR QKSSGPLVVC KKRRSVSAKA SPSSSSFSQK DDTKEETLSE  480
EKDNIATGVR SSRRANKVAA VVANNTKTGK GRNKQKQTES KTNSSNDNSS KQDTGKTEKK  540
TVSADKKKSV ADFLKRLKKN SPQKEAKDQN KSGGNVKKDS KTKPRELRSS SVGKKKAEVE  600
NTPVKRAPGR PQKKTAEATA SASGKRGRDT GSTGKDNKQP KKRIRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294KRKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.433530.0flower| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306897140.0
Genevisible267386_at0.0
Expression AtlasAT2G44430-
AtGenExpressAT2G44430-
ATTED-IIAT2G44430-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G44430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G44430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1207070.0AY120707.1 Arabidopsis thaliana unknown protein (At2g44430) mRNA, complete cds.
GenBankBT0096640.0BT009664.1 Arabidopsis thaliana At2g44430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181971.10.0DNA-binding bromodomain-containing protein
TrEMBLO648770.0O64877_ARATH; At2g44430
STRINGAT2G44430.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Representative plantOGRP38051123
Publications ? help Back to Top
  1. Pandey R, et al.
    Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.
    Nucleic Acids Res., 2002. 30(23): p. 5036-55
    [PMID:12466527]
  2. Berg A, et al.
    Ten members of the Arabidopsis gene family encoding methyl-CpG-binding domain proteins are transcriptionally active and at least one, AtMBD11, is crucial for normal development.
    Nucleic Acids Res., 2003. 31(18): p. 5291-304
    [PMID:12954765]
  3. Sudre D, et al.
    Iron-dependent modifications of the flower transcriptome, proteome, metabolome, and hormonal content in an Arabidopsis ferritin mutant.
    J. Exp. Bot., 2013. 64(10): p. 2665-88
    [PMID:23682113]