PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0063891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 263aa    MW: 29256.7 Da    PI: 7.9967
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0063891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-192282257
                            T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             +R+++tkeq++ Le+l+e+  r+psae ++  +++l    +++ ++V++WFqN++a++++
  RcHm_v2.0_Chr5g0063891 22 TTRWNPTKEQITMLENLYEQgVRTPSAEFIQAVTARLraygHIEGKNVFYWFQNHKARQRQ 82
                            58*****************99**************************************97 PP
2Wus_type_Homeobox109.91.4e-352183264
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++tRW+Pt+eQi++Le+ly++G+rtP++e iq +ta+L++yG+ie+kNVfyWFQN+kaR+rqk
  RcHm_v2.0_Chr5g0063891 21 NTTRWNPTKEQITMLENLYEQGVRTPSAEFIQAVTARLRAYGHIEGKNVFYWFQNHKARQRQK 83
                            689***********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MEREDQHVKN GGLAHGVGLE NTTRWNPTKE QITMLENLYE QGVRTPSAEF IQAVTARLRA  60
YGHIEGKNVF YWFQNHKARQ RQKEKQEASL AYFNRFLHKA AASQYPLYPP PQYPCANVIC  120
SPYYIPPVPS EIGFYSQSHP KVPPQSVGVK RRPRIEKLDV PTRTCSGGGS GGYEPMHHGY  180
GRGGCIDVND ATNRLMSNSD DPETLPLFPL TPTGLLQGRD EGPSTSDGNY AQNSTALVSS  240
SGIVEGHGDQ PSFYDFSVRT RLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.19e-44WOX family protein