PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0059711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 194aa MW: 21594.7 Da PI: 10.7034 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.6 | 1.6e-14 | 84 | 176 | 7 | 99 |
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 e+++e+++d+k ++P+ r+k+i++a++ +is++a l+ ka e f+ +l+ + + + ++++l ++++v + + ++fl RcHm_v2.0_Chr5g0059711 84 EEEVEEKEDVKSYTFPMERVKRIIRAEDSDLRISSDAVFLVNKATEKFLEKLSEDAHKCCVKDRKKALAYKHLSSVVCKQKRYEFLS 170 5789**********************999999******************************************************* PP NF-YC 94 divprd 99 d vp++ RcHm_v2.0_Chr5g0059711 171 DFVPEK 176 ***986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
MATPKKGTPP KKTKEAQKPS TKSSKNDGNK IKKKTGNGTA AAAAAVRSPS SKPQKSREQN 60 GGKSTKTPTP KSKKPQQNGK RVREEEVEEK EDVKSYTFPM ERVKRIIRAE DSDLRISSDA 120 VFLVNKATEK FLEKLSEDAH KCCVKDRKKA LAYKHLSSVV CKQKRYEFLS DFVPEKIKAG 180 DALAKRKQTQ EGTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 5e-32 | NF-YC family protein |