PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0058351

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 763aa MW: 83851.8 Da PI: 7.7354

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0058351	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28	3.6e-09	574	606	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gL+ +qV++WF N R + RcHm_v2.0_Chr5g0058351 574 HPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 606 89*****************************87 PP
2	BELL	104.5	7.4e-34	421	489	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e q+kkakLl ++eeV+++Ykqy++q+++v+ssFe vagl sa+pY slAl+++SrhFrcL i++q+ RcHm_v2.0_Chr5g0058351 421 EYQQKKAKLLCMQEEVCRKYKQYHQQMEMVVSSFESVAGLSSATPYMSLALNTVSRHFRCLTGSIKDQL 489 89***************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence
MEMSGFRPSE STHVAQQSRR DKLRVQQTSN LSHHHLDHNV PNNSPTHQNP DIVQVRNVRN 60 ANNLLFDPTL FSPELLNFSI NANHAFASSA QDLGDESPQN YGNWRNLNPP QSLDNWVTNY 120 TSGTTSNHHM FVREVSNISP STPSNLKPGT YHGYQQFSSP PPIYHNTLQD VVTTASTGGS 180 QQDQLEMASW TQGYVNQSTT LGFDNSSSWM DRPIGSNRHN WSGGEELRCA MSDYSNQQGL 240 SLSLSSNPPP SQQLQASTTG KSGGYLCSMM KPSIISKAYG TSKSLQDVVG TSATSTSNAA 300 YHRSTGPLGP FTGYATILKS SKFLKPAQQL LEEFCRVSNS KEFKTCEASE RISGDQASAS 360 ASVSVTVSND QAANTTQNSV VANMGRNNSG ASSSAFYGSN EISSDGGAAA ASTSSESFRP 420 EYQQKKAKLL CMQEEVCRKY KQYHQQMEMV VSSFESVAGL SSATPYMSLA LNTVSRHFRC 480 LTGSIKDQLK HIRKALGEDF SSVKIASNTG GNSRSDKTMG KLKYMGLGLQ KHKAAAGVDA 540 GFSEPQQHVW RPQRGLPDRS VAILRAWLFD HFLHPYPTDT DKHMLATQTG LSRNQVSNWF 600 INARVRVWKP MVEEIHMLET RGSMEACQDP GKDGNSPTEG TSRPNNEQLG MHHVITDRQL 660 ESSGVGSLRD APNVEEVDRS QEIKRSRIEC QVPSSMDGAL MGFVPYNRSG LEVGGLGAVS 720 LTLGLRHGVE NAQQQQQQQQ LHQQEEYQLR RQLGGHMIHD FVG

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence

MEMSGFRPSE STHVAQQSRR DKLRVQQTSN LSHHHLDHNV PNNSPTHQNP DIVQVRNVRN  60
ANNLLFDPTL FSPELLNFSI NANHAFASSA QDLGDESPQN YGNWRNLNPP QSLDNWVTNY  120
TSGTTSNHHM FVREVSNISP STPSNLKPGT YHGYQQFSSP PPIYHNTLQD VVTTASTGGS  180
QQDQLEMASW TQGYVNQSTT LGFDNSSSWM DRPIGSNRHN WSGGEELRCA MSDYSNQQGL  240
SLSLSSNPPP SQQLQASTTG KSGGYLCSMM KPSIISKAYG TSKSLQDVVG TSATSTSNAA  300
YHRSTGPLGP FTGYATILKS SKFLKPAQQL LEEFCRVSNS KEFKTCEASE RISGDQASAS  360
ASVSVTVSND QAANTTQNSV VANMGRNNSG ASSSAFYGSN EISSDGGAAA ASTSSESFRP  420
EYQQKKAKLL CMQEEVCRKY KQYHQQMEMV VSSFESVAGL SSATPYMSLA LNTVSRHFRC  480
LTGSIKDQLK HIRKALGEDF SSVKIASNTG GNSRSDKTMG KLKYMGLGLQ KHKAAAGVDA  540
GFSEPQQHVW RPQRGLPDRS VAILRAWLFD HFLHPYPTDT DKHMLATQTG LSRNQVSNWF  600
INARVRVWKP MVEEIHMLET RGSMEACQDP GKDGNSPTEG TSRPNNEQLG MHHVITDRQL  660
ESSGVGSLRD APNVEEVDRS QEIKRSRIEC QVPSSMDGAL MGFVPYNRSG LEVGGLGAVS  720
LTLGLRHGVE NAQQQQQQQQ LHQQEEYQLR RQLGGHMIHD FVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	4e-87	TALE family protein