PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0057501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 376aa MW: 42522.4 Da PI: 7.8028 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl RcHm_v2.0_Chr5g0057501 14 KGPWSPEEDSKLKEYIDKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.4 | 6.6e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr5g0057501 69 GEFSEEEDRIICTLFTSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence |
MGRAPCCDKA NVKKGPWSPE EDSKLKEYID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSEEEDRIIC TLFTSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLRDM 120 QTHMAPPSLT TSQSHRSNPP PFPVSSSLHQ FQNQPFHHQP LSLMHKDLNM MTYSTYTPTL 180 TSPATPGSFS SGFEIMPNIS NPLTNYSSLF QTQECLVGSM HYNHPAVKKN LNLIMFGSEG 240 SCSTSSDGSC NNNQISYESR RSGNIKQEEM GMGFQLEDPN QKFMMLNYGN SSSAAISDDH 300 HNYINNNNQW GERPNGYNGN NTRFGDYDLE DVKQLISSSS TDINININND NGSISNSLFS 360 VDENKTDHKE KVMYFY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 118 | KLKKKLR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-79 | MYB family protein |