PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0442781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ARR-B | ||||||||
Protein Properties | Length: 667aa MW: 72428.2 Da PI: 6.9204 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.4 | 2.7e-27 | 235 | 288 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gL++e+v+SHLQk+Rl RcHm_v2.0_Chr4g0442781 235 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLSRENVASHLQKFRL 288 79*******************.********************************8 PP | |||||||
2 | Myb_DNA-binding | 39.1 | 1.7e-12 | 237 | 287 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g++++++ s++qk++ RcHm_v2.0_Chr4g0442781 237 RVVWSVELHQQFVSAVNQLGLDkaVPKRILELMNvPGLSRENVASHLQKFR 287 678**********************************************97 PP | |||||||
3 | Response_reg | 77.5 | 4.7e-26 | 49 | 157 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 vl+vdD+ + + +l+q+l++ y +v+ ++++++al+ l+ek+ +D++l D+ mp+mdG++ll+ i e +lp+i+++a g + RcHm_v2.0_Chr4g0442781 49 VLVVDDDTTCLAILEQMLRRCLY-QVTLCSQATDALNHLREKKgyFDVVLSDVHMPDMDGFKLLECIGLEM-DLPVIMMSADGRTSA 133 89*********************.***************999999**********************6654.8************** PP HHHHHHTTESEEEESS--HHHHHH CS Response_reg 86 alealkaGakdflsKpfdpeelvk 109 + + ++ Ga d+l Kp+ +eel + RcHm_v2.0_Chr4g0442781 134 VMKGIRHGACDYLIKPVREEELKN 157 *********************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence |
MAALQSVVQS CLSTTTASSF GSCKGGGGAS SASANVMAVH DQFPAGLRVL VVDDDTTCLA 60 ILEQMLRRCL YQVTLCSQAT DALNHLREKK GYFDVVLSDV HMPDMDGFKL LECIGLEMDL 120 PVIMMSADGR TSAVMKGIRH GACDYLIKPV REEELKNIWQ HVARKKLNEN KEIEHSGSLE 180 DNDRHKRGIN DVEYTSSVIE GTEGTARTRS QKKRSSGKED EDGDMENDDM STSKKPRVVW 240 SVELHQQFVS AVNQLGLDKA VPKRILELMN VPGLSRENVA SHLQKFRLYL KRLSVEQQQS 300 ANAFCGPVES NVKLVSHGNR FDIQALAAAG QIPPQTLAAL QAELLGQPVG NPGSTIDQPA 360 ILHASLQRPK RAPVDHGVAF GQPLIKRQSN VSVHFPQCII SAEDASAGGP WRSNSLGTVA 420 PNSNLGGFST QNSNVFMDTL QQEQRPQPKR HQQSLLTEPV RTINVQPSCL VVPSQSSASF 480 QAGNSPASVN QSCSFNRSTA IDYSLLSAQS NNNSSLNIGR ISNGHHKTPG ILSGYSATGS 540 LSTPSSSVIA ESSISPQNSA VTYSDARQLT GRLHNMSNIQ DLYVPKSGEM LDQGAYRNLG 600 FVGKETRIPS RFDEFESQSN LNHGNIHAEN IGNPVKQEPN MGFVDNAKGS PIFQQFSSSD 660 LMSVFNE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-115 | ARR-B family protein |