PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0440161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 482aa MW: 54530.9 Da PI: 6.5239

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0440161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.6	3.3e-14	24	68	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd+ l + + +G+++W+ Ia+++ +t qc+ rw++yl RcHm_v2.0_Chr4g0440161 24 TWTQEEDDTLREQISIHGTENWAIIASKFK-DKTTRQCRRRWYTYL 68 6**************************9.***********97 PP
2	Myb_DNA-binding	44.9	2.7e-14	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd+ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + RcHm_v2.0_Chr4g0440161 74 KGGWSPEEDLLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 117 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MQEIKKKLGN EYSDPKKKER HIVTWTQEED DTLREQISIH GTENWAIIAS KFKDKTTRQC 60 RRRWYTYLNS DFKKGGWSPE EDLLLCEAQK IFGNRWTEIA KVVSGRTDNA VKNRFSTLCK 120 KRAKYEALAK ENASSYMNQN DKRVIIRNGF NTDGTSENTS PLKKMRRSHI PSLSENCNYG 180 DRRHGQCGKT NQQLRAPFTV LIQNIHSVNN LQDQHNVNIS KEAPRDAAQT NKFQGSFLKK 240 DDPKITALMQ QAELLSSLAM KVNTDNTDQS LENAWKVLQD FLNQSKESDI LSYGMSDFDF 300 QLEDLKYLLE DLRSTSEGGR PSWRQPDLYD ESPGSSEYST GSTLLSQTEC YKMEQIEAEI 360 GTITQDIPHE LQTIHIGEQN NIGELEKGIV SNGTRKQAEI LPSCDEATND DAVVSALSST 420 EFSSPIQVTP MFRSLAAGIP SPKFSDSERS FLLKTLGADS PFPNPSTNSQ TPLCKRALLQ 480 SL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MQEIKKKLGN EYSDPKKKER HIVTWTQEED DTLREQISIH GTENWAIIAS KFKDKTTRQC  60
RRRWYTYLNS DFKKGGWSPE EDLLLCEAQK IFGNRWTEIA KVVSGRTDNA VKNRFSTLCK  120
KRAKYEALAK ENASSYMNQN DKRVIIRNGF NTDGTSENTS PLKKMRRSHI PSLSENCNYG  180
DRRHGQCGKT NQQLRAPFTV LIQNIHSVNN LQDQHNVNIS KEAPRDAAQT NKFQGSFLKK  240
DDPKITALMQ QAELLSSLAM KVNTDNTDQS LENAWKVLQD FLNQSKESDI LSYGMSDFDF  300
QLEDLKYLLE DLRSTSEGGR PSWRQPDLYD ESPGSSEYST GSTLLSQTEC YKMEQIEAEI  360
GTITQDIPHE LQTIHIGEQN NIGELEKGIV SNGTRKQAEI LPSCDEATND DAVVSALSST  420
EFSSPIQVTP MFRSLAAGIP SPKFSDSERS FLLKTLGADS PFPNPSTNSQ TPLCKRALLQ  480
SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02820.2	0.0	MYB family protein