PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0421601

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 1096aa MW: 123248 Da PI: 9.3536

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0421601	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.8	2.4e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WTteE + ++++ +++G + Wk++a+ + +R+ +++ RcHm_v2.0_Chr4g0421601 46 QWTTEELKHFYEGYRKYGRD-WKKVASVVR-HRSVENV 81 6***************77.*******.9998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1096 aa Download sequence
MAPVRKTKGV NKRFPYINEV ASSKYGDNAN KNKQKKRKLS DMLGPQWTTE ELKHFYEGYR 60 KYGRDWKKVA SVVRHRSVEN VEALYTMNRA YLSLPEGTAS VIGLTAMMCD YYSMLERSDS 120 EQESIDDAGT SRKPRKLARG KLRNDTSKGL EGHIPDISHS RSIASDGCLS LLKNRRTGIR 180 PHAVKKRTPR VPVSSYDKDN SKKYFSPARQ GIKTSTDGSD VNMGQELAFS LTEPSHKGSS 240 PQVSRTPKSR AKGSTPSPVQ NGERMFAETD MKIGRPRGGE MDGVGCELSL GSMQADYDME 300 RYYLKRQKRE ESENKHLDDV KESSSGTEEE QYKISAVKGK LGTRVVGAKN ASSFHKDRKK 360 TKTANVGRDE DSSFDALLTL ADLSLRMPEA TAEMESSAPV EEENFNIAKK SKLKGNPSVT 420 MVEEDTALKT SHLGKLKEGL PQSTTGIQKR KQKSPVKLQI NENEAQTEFP WKDNQMIEST 480 DEVNYVNKVK RSSHYDTHQK QGKLVKPLGN SSSTTDRERQ ENNSGLSTVQ VQYANQANLT 540 LRDKSRRKDI QKDAKSLQST SYDQPDKLVL SVPKNELNLK GRLSNCLSRY QARRWCAFEW 600 FYSAIDFPWF AKREFVEYLN HVGLGHVPRL TRVEWGVIRS SLGRPRRFSD QFLKEEKEKL 660 HQYRESVRKH YAELNAGTRD GLPTDLARPL SVGQHVIAFH PRSREIHNGI VLSVDHSRYR 720 VQFDQSDLGV ADIMDIDCMP LNPLENVPAS FTRQNIIVNK YTENFREIKI NEQQKEGKTE 780 GYMKAVSTGN LNSTAVPCHI LPTTPQTNKS SKHIEMQAKE ADVRALFELT RALDKKDAVV 840 SELRRMNDEV FEKCRDGDDS IKNSEPFKKE YAAVLLQLSE INDQVSSALF CLRQRNTYRG 900 SYPLISANPL SGFSDSSGHS SSLCHVQEPA THVYEIVESS RAKAKEMVHV AMQAISSLKR 960 ENNIERIQEV IDFVSQQLSE DDAGRLSMGS STPAAPILVS EDQSTACTEK PDPKSNSLSN 1020 QSEDQLLSDL IANCVAALFM IQTCTARQFS PADVAWVLDR AVTSLKPICT QNLPVYGEIQ 1080 KCMGIVRSQI LALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1096 aa Download sequence

MAPVRKTKGV NKRFPYINEV ASSKYGDNAN KNKQKKRKLS DMLGPQWTTE ELKHFYEGYR  60
KYGRDWKKVA SVVRHRSVEN VEALYTMNRA YLSLPEGTAS VIGLTAMMCD YYSMLERSDS  120
EQESIDDAGT SRKPRKLARG KLRNDTSKGL EGHIPDISHS RSIASDGCLS LLKNRRTGIR  180
PHAVKKRTPR VPVSSYDKDN SKKYFSPARQ GIKTSTDGSD VNMGQELAFS LTEPSHKGSS  240
PQVSRTPKSR AKGSTPSPVQ NGERMFAETD MKIGRPRGGE MDGVGCELSL GSMQADYDME  300
RYYLKRQKRE ESENKHLDDV KESSSGTEEE QYKISAVKGK LGTRVVGAKN ASSFHKDRKK  360
TKTANVGRDE DSSFDALLTL ADLSLRMPEA TAEMESSAPV EEENFNIAKK SKLKGNPSVT  420
MVEEDTALKT SHLGKLKEGL PQSTTGIQKR KQKSPVKLQI NENEAQTEFP WKDNQMIEST  480
DEVNYVNKVK RSSHYDTHQK QGKLVKPLGN SSSTTDRERQ ENNSGLSTVQ VQYANQANLT  540
LRDKSRRKDI QKDAKSLQST SYDQPDKLVL SVPKNELNLK GRLSNCLSRY QARRWCAFEW  600
FYSAIDFPWF AKREFVEYLN HVGLGHVPRL TRVEWGVIRS SLGRPRRFSD QFLKEEKEKL  660
HQYRESVRKH YAELNAGTRD GLPTDLARPL SVGQHVIAFH PRSREIHNGI VLSVDHSRYR  720
VQFDQSDLGV ADIMDIDCMP LNPLENVPAS FTRQNIIVNK YTENFREIKI NEQQKEGKTE  780
GYMKAVSTGN LNSTAVPCHI LPTTPQTNKS SKHIEMQAKE ADVRALFELT RALDKKDAVV  840
SELRRMNDEV FEKCRDGDDS IKNSEPFKKE YAAVLLQLSE INDQVSSALF CLRQRNTYRG  900
SYPLISANPL SGFSDSSGHS SSLCHVQEPA THVYEIVESS RAKAKEMVHV AMQAISSLKR  960
ENNIERIQEV IDFVSQQLSE DDAGRLSMGS STPAAPILVS EDQSTACTEK PDPKSNSLSN  1020
QSEDQLLSDL IANCVAALFM IQTCTARQFS PADVAWVLDR AVTSLKPICT QNLPVYGEIQ  1080
KCMGIVRSQI LALVPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein