PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0421591

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 894aa MW: 104925 Da PI: 7.8311

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0421591	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WTteE + ++++ +++G++ W ++a+ + +R+l+++ RcHm_v2.0_Chr4g0421591 46 QWTTEELKHFYEGYRKYGKD-WMKVASVVR-HRSLENV 81 6***************99.*****.*9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence
MAPVRKTKGV NKRFPYINEV ASNKYGDNAN KNKQKKRKMS DMLGPQWTTE ELKHFYEGYR 60 KYGKDWMKVA SVVRHRSLEN VEALYTMNRA YLSLPEGAAS VIGLTAMMCD YYSMLERSDS 120 EQNCIDNAGT PRKSQKLARG KLRNDASKGL EGHILDISQS RSIASDGCLS LLKNRRTDED 180 SSFDALLTLA DLSLRMPEAT AEMESSALVE EENFNIAKKS KLKGNHSVTM VEDTALKTSQ 240 LGKLKEGVQQ SDTGIQKRKQ KSPVKLQINE NEAQTEFPWS DNQMIEILKS SFDSRILRLW 300 IRRNKMARPK FKIISSSSEE FREDTQSQES LDEETPTSFQ KTLQHEMTKI KHRKKKQAED 360 TDDEETAEEE TEDEDEEETT SRYCVKKRSQ KRNTTDDEDE EYDQKEKKKR KVQLPKTKEQ 420 KAKKHGRKKK EEKEETEKKE ENIAKIDWRQ QKCTLSAFWR LIDAHKSRIP AATWEILRHT 480 VFWGMIEPFL ERKLTENQLH KHEADLEIIM RYFDKKKNKF IFGEKEMEIT VQDVKTLFDL 540 PTEGIYMELN KKLSKEERKE SAIFDTNVKK DSVLKTEVEK KLVKELTKEK KEKDLKKQQD 600 PKKIASLIIM YLFAAFFFSR TATNITWDLI SVCEDIDNIN KFNWSRMIID FLLDGIQKYQ 660 KDKPTTLSGC LLLIYYWFLE KTKIKNWIPG KETETPRFVR WSIKEIFNLQ EVYKNPGWPE 720 RLIKDGPWLE KEWLEELEFE EKIEEQETPS FNNWVPQASQ REEEEIIRLT GNMRVIIEEL 780 ETVLREEPTR ENMEEKLKRL AEGNEQLSKQ NKEMWTKLKI ADEMIESMEK KKHDLLLETR 840 ASKNQIAALY KLLAKAKHSG NAGASQQKES QLQIVQISTE EEQVRQAEFE DNRA

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence

MAPVRKTKGV NKRFPYINEV ASNKYGDNAN KNKQKKRKMS DMLGPQWTTE ELKHFYEGYR  60
KYGKDWMKVA SVVRHRSLEN VEALYTMNRA YLSLPEGAAS VIGLTAMMCD YYSMLERSDS  120
EQNCIDNAGT PRKSQKLARG KLRNDASKGL EGHILDISQS RSIASDGCLS LLKNRRTDED  180
SSFDALLTLA DLSLRMPEAT AEMESSALVE EENFNIAKKS KLKGNHSVTM VEDTALKTSQ  240
LGKLKEGVQQ SDTGIQKRKQ KSPVKLQINE NEAQTEFPWS DNQMIEILKS SFDSRILRLW  300
IRRNKMARPK FKIISSSSEE FREDTQSQES LDEETPTSFQ KTLQHEMTKI KHRKKKQAED  360
TDDEETAEEE TEDEDEEETT SRYCVKKRSQ KRNTTDDEDE EYDQKEKKKR KVQLPKTKEQ  420
KAKKHGRKKK EEKEETEKKE ENIAKIDWRQ QKCTLSAFWR LIDAHKSRIP AATWEILRHT  480
VFWGMIEPFL ERKLTENQLH KHEADLEIIM RYFDKKKNKF IFGEKEMEIT VQDVKTLFDL  540
PTEGIYMELN KKLSKEERKE SAIFDTNVKK DSVLKTEVEK KLVKELTKEK KEKDLKKQQD  600
PKKIASLIIM YLFAAFFFSR TATNITWDLI SVCEDIDNIN KFNWSRMIID FLLDGIQKYQ  660
KDKPTTLSGC LLLIYYWFLE KTKIKNWIPG KETETPRFVR WSIKEIFNLQ EVYKNPGWPE  720
RLIKDGPWLE KEWLEELEFE EKIEEQETPS FNNWVPQASQ REEEEIIRLT GNMRVIIEEL  780
ETVLREEPTR ENMEEKLKRL AEGNEQLSKQ NKEMWTKLKI ADEMIESMEK KKHDLLLETR  840
ASKNQIAALY KLLAKAKHSG NAGASQQKES QLQIVQISTE EEQVRQAEFE DNRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	407	412	KKKRKV
2	407	430	KKKRKVQLPKTKEQKAKKHGRKKK
3	407	433	KKKRKVQLPKTKEQKAKKHGRKKKEEK
4	408	431	KKKRKVQLPKTKEQKAKKHGRKKK
5	408	434	KKKRKVQLPKTKEQKAKKHGRKKKEEK
6	409	432	KKKRKVQLPKTKEQKAKKHGRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-44	MYB_related family protein