PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0403841

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 358aa MW: 39014.1 Da PI: 6.6401

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0403841	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	15	55	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+++++ + fC+ ++ +lC +C +++H H+ RcHm_v2.0_Chr4g0403841 15 KPCDTCKSSPSAVFCRADSAYLCLTCDSKIHCAnklasrHQ 55 68****************************95545666666 PP
2	zf-B_box	27	9.6e-09	56	102	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ RcHm_v2.0_Chr4g0403841 56 RVWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 102 5789*****************************66899999999986 PP
3	CCT	69.9	6.4e-24	285	328	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++ RcHm_v2.0_Chr4g0403841 285 REARVMRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRT 328 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MGLQAGWTLP GLTPKPCDTC KSSPSAVFCR ADSAYLCLTC DSKIHCANKL ASRHQRVWMC 60 EVCEQAPAAV TCKADAAALC VTCDADIHSA NPLARRHERV PVEPFLDSAE SIVKSTSAVG 120 LSDAASSLKN DDADSLLIPN LNFSSKFIDA LDIKPGDMFF PEMESLFELD YPNPIQNSSS 180 GMDSVVPVQP DPIPPPPVVN QPPRENCFDI DFCRNKLSSS FSYPAQSISQ SVSSSSLDVG 240 VVPDGNSLSD ISYPFIRNVN HNGVESGVAA APATATAIQL SGVDREARVM RYREKRKNRK 300 FQKTIRYASR KAYAETRPRI KGRFAKRTET ETEVMDRIFN SAPGSYIADA QYGVVPTF

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MGLQAGWTLP GLTPKPCDTC KSSPSAVFCR ADSAYLCLTC DSKIHCANKL ASRHQRVWMC  60
EVCEQAPAAV TCKADAAALC VTCDADIHSA NPLARRHERV PVEPFLDSAE SIVKSTSAVG  120
LSDAASSLKN DDADSLLIPN LNFSSKFIDA LDIKPGDMFF PEMESLFELD YPNPIQNSSS  180
GMDSVVPVQP DPIPPPPVVN QPPRENCFDI DFCRNKLSSS FSYPAQSISQ SVSSSSLDVG  240
VVPDGNSLSD ISYPFIRNVN HNGVESGVAA APATATAIQL SGVDREARVM RYREKRKNRK  300
FQKTIRYASR KAYAETRPRI KGRFAKRTET ETEVMDRIFN SAPGSYIADA QYGVVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	5e-99	CO-like family protein