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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G57660.1 | ||||||||
Common Name | ATCOL5, BBX6, COL5, MRI1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | CO-like | ||||||||
Protein Properties | Length: 355aa MW: 38820.4 Da PI: 6.4276 | ||||||||
Description | CONSTANS-like 5 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.3 | 6.4e-08 | 19 | 57 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 +r C+ +++ + fC+ ++ +lC C + +H+ H++ AT5G57660.1 19 ARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSFtrHER 57 578******99*********************6577876 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 58 | 103 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ AT5G57660.1 58 VWVCEVCEQAPAAVTCKADAAALCVSCDADIHSAnplasrHERVPV 103 689*****************************66999999999986 PP | |||||||
3 | CCT | 70 | 6.1e-24 | 285 | 328 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ AT5G57660.1 285 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 328 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.6E-6 | 17 | 60 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.04 | 17 | 60 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-6 | 20 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.11E-9 | 20 | 60 | No hit | No description |
PROSITE profile | PS50119 | 10.68 | 56 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.6E-7 | 57 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.48E-9 | 59 | 103 | No hit | No description |
SMART | SM00336 | 1.7E-9 | 61 | 103 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.817 | 285 | 327 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.5E-18 | 285 | 327 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020003 | anatomy | plant ovule | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV 60 CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER VPVETFFDSA ETAVAKISAS 120 STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD 180 RLIDFEFPNS FNHHQNNAGG DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS 240 VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK 300 FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.20797 | 0.0 | leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30696905 | 0.0 | ||||
Genevisible | 247921_at | 0.0 | ||||
Expression Atlas | AT5G57660 | - | ||||
AtGenExpress | AT5G57660 | - | ||||
ATTED-II | AT5G57660 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G57660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9FHH8 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G57660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057632 | 0.0 | AY057632.1 Arabidopsis thaliana AT5g57660/MRI1_1 mRNA, complete cds. | |||
GenBank | AY080747 | 0.0 | AY080747.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At5g57660) mRNA, complete cds. | |||
GenBank | AY114006 | 0.0 | AY114006.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At5g57660) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_568863.1 | 0.0 | CONSTANS-like 5 | ||||
Swissprot | Q9FHH8 | 0.0 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A178U962 | 0.0 | A0A178U962_ARATH; COL5 | ||||
STRING | AT5G57660.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7899 | 24 | 35 | Representative plant | OGRP691 | 17 | 67 |
Link Out ? help Back to Top | |
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Phytozome | AT5G57660.1 |
Entrez Gene | 835872 |
iHOP | AT5G57660 |
wikigenes | AT5G57660 |