PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0455181

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 1110aa MW: 123517 Da PI: 9.6929

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0455181	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	39	74	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E +++++a +++G + Wk++a+ + +R +++ RcHm_v2.0_Chr3g0455181 39 QWSKGELQRFYEAYRKYGQN-WKKVAAVVR-NRNIEMV 74 6***************88.******9.9988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1110 aa Download sequence
MAPTRKAKTV KRYSNLSEAS PGGKNKQGKR KFTDQLGPQW SKGELQRFYE AYRKYGQNWK 60 KVAAVVRNRN IEMVEALYNM NRAYLSLPEG TASVVGLIAM MTDHYNVMEG SESERESNDA 120 IRYSRRPQKR KLGKDSVSKD VFQSHSMASV DGCLSYLKRR RLDGNQPRAV GKRTPRFPVQ 180 YSSKKDDGEN YASPIRRGRK SEADNDYDVA QVAALLTEAS HRGGSPQLSQ TPYRRSSGQS 240 SQRMHPPSGK AQANLRDASM DEDCLEGSIG SRGAETGDYA RDSSSLMDME GVGTVEINRK 300 GKKVYGKKEK VQDIRNHQFD DGGEACSGTE GGLNVSAKGK VDIEVSDAKG DWFSSQVQRN 360 ESKKLYFGDD SAELDALQTL ADLSLMMPAS TMESGSSLQL KDERTTSEME EKSNIPESTS 420 TSQFRNKNKL PGGKHREPIA DSRTEGTNAK KSKFARDSTP IDINVVSESE QLQPTNKLLK 480 RRRKPSVSKI LNAEANVDST INEPSNSEAF GQEETKPVVK GKRTGQISTP SKQWKSVKPV 540 DGSLNSDFGQ TVSDLMPVTA EGPTPNQVHS PTKQRSRRKR YLPRAAVPKS SENILKTQLH 600 KHSNSVQDRV LYLKEKMSCC LSSHLVRRWC TFEWFYSAID YPWFAKREFE EYLNHVGLGH 660 IPRLTRVEWG VIRSSLGKPR RFSEHFLCEE REKLKQYRES VRKHYAELRS GVREGLPTDL 720 ARPLSVGQRV IALHPKTREV HDGSVLTVDH DKCRVQFDRP EIGVEFVMDV DCMPSNPLDN 780 MPEALKRQNI AFDKFPLTLP HLNGNLNFER PVMNASSGHL EKEPSPMNTS LQQGKGDTNH 840 IISQPKAASV DIAGAQTASS QPGVVAHNQA READIRALSD LNRALDKKVS SALLSLRQRN 900 TYPGNTLPPS MKHPTNSTVY GGLPSSFDIS ISQESGSSVA DIVEVSRLKA HTLVNAAVQA 960 MSSRKEGEEA YVRVRRALDS IDIQNMTSDS RSAVSRTQEQ VNGNLGHRNQ LISGASEPNL 1020 SNDASGPKLH TETDKNESQM LSEVITACVM AVHMIQTCTE RQYPPAVVAQ VLDYAVTSLH 1080 PRCPQNVGMY REIQMCMGRI KTQILALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1110 aa Download sequence

MAPTRKAKTV KRYSNLSEAS PGGKNKQGKR KFTDQLGPQW SKGELQRFYE AYRKYGQNWK  60
KVAAVVRNRN IEMVEALYNM NRAYLSLPEG TASVVGLIAM MTDHYNVMEG SESERESNDA  120
IRYSRRPQKR KLGKDSVSKD VFQSHSMASV DGCLSYLKRR RLDGNQPRAV GKRTPRFPVQ  180
YSSKKDDGEN YASPIRRGRK SEADNDYDVA QVAALLTEAS HRGGSPQLSQ TPYRRSSGQS  240
SQRMHPPSGK AQANLRDASM DEDCLEGSIG SRGAETGDYA RDSSSLMDME GVGTVEINRK  300
GKKVYGKKEK VQDIRNHQFD DGGEACSGTE GGLNVSAKGK VDIEVSDAKG DWFSSQVQRN  360
ESKKLYFGDD SAELDALQTL ADLSLMMPAS TMESGSSLQL KDERTTSEME EKSNIPESTS  420
TSQFRNKNKL PGGKHREPIA DSRTEGTNAK KSKFARDSTP IDINVVSESE QLQPTNKLLK  480
RRRKPSVSKI LNAEANVDST INEPSNSEAF GQEETKPVVK GKRTGQISTP SKQWKSVKPV  540
DGSLNSDFGQ TVSDLMPVTA EGPTPNQVHS PTKQRSRRKR YLPRAAVPKS SENILKTQLH  600
KHSNSVQDRV LYLKEKMSCC LSSHLVRRWC TFEWFYSAID YPWFAKREFE EYLNHVGLGH  660
IPRLTRVEWG VIRSSLGKPR RFSEHFLCEE REKLKQYRES VRKHYAELRS GVREGLPTDL  720
ARPLSVGQRV IALHPKTREV HDGSVLTVDH DKCRVQFDRP EIGVEFVMDV DCMPSNPLDN  780
MPEALKRQNI AFDKFPLTLP HLNGNLNFER PVMNASSGHL EKEPSPMNTS LQQGKGDTNH  840
IISQPKAASV DIAGAQTASS QPGVVAHNQA READIRALSD LNRALDKKVS SALLSLRQRN  900
TYPGNTLPPS MKHPTNSTVY GGLPSSFDIS ISQESGSSVA DIVEVSRLKA HTLVNAAVQA  960
MSSRKEGEEA YVRVRRALDS IDIQNMTSDS RSAVSRTQEQ VNGNLGHRNQ LISGASEPNL  1020
SNDASGPKLH TETDKNESQM LSEVITACVM AVHMIQTCTE RQYPPAVVAQ VLDYAVTSLH  1080
PRCPQNVGMY REIQMCMGRI KTQILALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	131	RRPQKRK
2	125	132	RRPQKRKL
3	158	162	KRRRL
4	479	485	LKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein