PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0134881

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 737aa MW: 85639.8 Da PI: 5.0134

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0134881	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.6e-22	128	211	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++++w+v++++leHnH RcHm_v2.0_Chr2g0134881 128 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRKKETRTGCLAMIRLRLVESNRWRVDEVKLEHNH 209 69**************************************99888.....88999**************************** PP FAR1 88 el 89 + RcHm_v2.0_Chr2g0134881 210 LF 211 77 PP

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence
MTGDATFSPT NRALSFTIEE GSQNSEQLLE DENNDLGNDC EQLFEIDANE PESERDDTSD 60 QFFEIDSNDN ENDRGDLNEQ LFDIQGNDHE MSRNDDTVID GQNGGSQEKV YPQPVVGLEF 120 DSYDDAYNYY NCYAKELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKTI KEANSRKKET 180 RTGCLAMIRL RLVESNRWRV DEVKLEHNHL FDPERAQNSK SHKKMDSGAK RKMEPTLDVE 240 VRTIKLYRTP GSDIVGYGSS NSYEGESNSY VDVSKRLKLK QGDARAIYKY FSRVQLTDPN 300 FFYVNDLSDE GHLRNVFWID SRSRAAYGYF GDVVAFDTTC LSNNYEIPLV AFVGVNHHGQ 360 TILLGCGLLA DETVETYIWL FRAWLTCMSG RPPQTIITNQ CKAMHSAIVE VFPRAHHRLC 420 TSHVVQSILE NMEALQDYEA FQMILSRTVY DSLKADEFES GWEDMIQRFG IRNHEFLQTL 480 YEDRERWGPA YSKDTCFAGM PDFQNGESTR PYFDGHIHQR TSLEEFFEVY DFVLENKRQE 540 EARNDLVSRE LNPILRTRCY YELQLSKFYT KDVFRKFQHE VAMMSSCFSI TQVHTNGPIV 600 TYMVKEREGE EILRGVRNFE VMYDKAGAEV RCMCSCLNLN GYLCRHALCI LNYNGVEEIP 660 FQYIFSRWRK DFKRLYVPDL GCNNVDITNP VQWFDHLYRR AMQVVQEGMI SQDHYMVSWQ 720 AFKESLNKVR LVADKQV

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence

MTGDATFSPT NRALSFTIEE GSQNSEQLLE DENNDLGNDC EQLFEIDANE PESERDDTSD  60
QFFEIDSNDN ENDRGDLNEQ LFDIQGNDHE MSRNDDTVID GQNGGSQEKV YPQPVVGLEF  120
DSYDDAYNYY NCYAKELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKTI KEANSRKKET  180
RTGCLAMIRL RLVESNRWRV DEVKLEHNHL FDPERAQNSK SHKKMDSGAK RKMEPTLDVE  240
VRTIKLYRTP GSDIVGYGSS NSYEGESNSY VDVSKRLKLK QGDARAIYKY FSRVQLTDPN  300
FFYVNDLSDE GHLRNVFWID SRSRAAYGYF GDVVAFDTTC LSNNYEIPLV AFVGVNHHGQ  360
TILLGCGLLA DETVETYIWL FRAWLTCMSG RPPQTIITNQ CKAMHSAIVE VFPRAHHRLC  420
TSHVVQSILE NMEALQDYEA FQMILSRTVY DSLKADEFES GWEDMIQRFG IRNHEFLQTL  480
YEDRERWGPA YSKDTCFAGM PDFQNGESTR PYFDGHIHQR TSLEEFFEVY DFVLENKRQE  540
EARNDLVSRE LNPILRTRCY YELQLSKFYT KDVFRKFQHE VAMMSSCFSI TQVHTNGPIV  600
TYMVKEREGE EILRGVRNFE VMYDKAGAEV RCMCSCLNLN GYLCRHALCI LNYNGVEEIP  660
FQYIFSRWRK DFKRLYVPDL GCNNVDITNP VQWFDHLYRR AMQVVQEGMI SQDHYMVSWQ  720
AFKESLNKVR LVADKQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1 family protein