PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0313431

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 655aa MW: 72892.9 Da PI: 10.4944

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0313431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.8	1.9e-11	27	78	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 +W t+E++ l++avk++G ++W+++a +++ ++ t+++ck ++q++ RcHm_v2.0_Chr1g0313431 27 SWGTWEELVLACAVKRHGVKDWESVAMEVQgktslpqLHTTAYNCKRKYQDL 78 6**********************************9**********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MERYHDGDGD VRMKGGGTSD SGEEVESWGT WEELVLACAV KRHGVKDWES VAMEVQGKTS 60 LPQLHTTAYN CKRKYQDLQR RFHQSHDDQD PIPWLHHLKD LRLAQLRQDL HRYDVSILSL 120 QLKVKKLEEE EKDDDPKPDL EERDSKGRTR TRSEEEEEDD KKTPDEPDRF KHENQSVNGS 180 NSTCSKTHEH EEGHNHKKSP TEPDPLPAGS AQPSKGRSDS DDDSDKGSCE TVAKKRRRQE 240 RGAAASRESG SSEAQSSASL TRKRRRKLEL EDQPDERVLG KSQPLAAILQ MIRAHQHGSL 300 FQRRLTSQES DKYTNMVRQH VDLETIQTRL QKDSYSTLTF YRDLLLLLSN AVVFFPKSST 360 ESVAAHQLRR LVLNEMKKRN LITRPDPSSG PSDSLPSQTT IPTDSLLAKH KSTAPIIVCR 420 KRSSISSKPS TIARKASTTT DHPAAEAPAA FDIKPPNNST KTSNLNNVDE DNGSKEKPVT 480 GTRSSRRTTT THHHDNNAGA SSTKKKISSP AETPKAGKKR KTPEPATASD KKRSGAAAAA 540 ADFLKRIKRN SPAQQKLKLN GGTGSSTSTR GAEQKKRGAN KTDKVKGRVS RQSGGENKKQ 600 VKEESSPSKR SIGRPSKRAA ETAAAANVVS PKRSRENGGK QQQESSKRPK KRSRR

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MERYHDGDGD VRMKGGGTSD SGEEVESWGT WEELVLACAV KRHGVKDWES VAMEVQGKTS  60
LPQLHTTAYN CKRKYQDLQR RFHQSHDDQD PIPWLHHLKD LRLAQLRQDL HRYDVSILSL  120
QLKVKKLEEE EKDDDPKPDL EERDSKGRTR TRSEEEEEDD KKTPDEPDRF KHENQSVNGS  180
NSTCSKTHEH EEGHNHKKSP TEPDPLPAGS AQPSKGRSDS DDDSDKGSCE TVAKKRRRQE  240
RGAAASRESG SSEAQSSASL TRKRRRKLEL EDQPDERVLG KSQPLAAILQ MIRAHQHGSL  300
FQRRLTSQES DKYTNMVRQH VDLETIQTRL QKDSYSTLTF YRDLLLLLSN AVVFFPKSST  360
ESVAAHQLRR LVLNEMKKRN LITRPDPSSG PSDSLPSQTT IPTDSLLAKH KSTAPIIVCR  420
KRSSISSKPS TIARKASTTT DHPAAEAPAA FDIKPPNNST KTSNLNNVDE DNGSKEKPVT  480
GTRSSRRTTT THHHDNNAGA SSTKKKISSP AETPKAGKKR KTPEPATASD KKRSGAAAAA  540
ADFLKRIKRN SPAQQKLKLN GGTGSSTSTR GAEQKKRGAN KTDKVKGRVS RQSGGENKKQ  600
VKEESSPSKR SIGRPSKRAA ETAAAANVVS PKRSRENGGK QQQESSKRPK KRSRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	266	RKRRR
2	504	521	KKKISSPAETPKAGKKRK
3	647	655	KRPKKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	9e-38	MYB_related family protein