PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919683.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 512aa MW: 56098.8 Da PI: 4.9085

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.2	5.5e-13	175	197	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tGtCk+G++C+F+H+ XP_023919683.1 175 EDCSFYLKTGTCKFGSNCRFNHP 197 89********************9 PP
2	zf-CCCH	26.2	1.4e-08	222	243	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +C++++r+G Ck+G C+++H XP_023919683.1 222 LECKYYLRSGGCKFGKACRYNH 243 58******************** PP
3	zf-CCCH	42.5	1.1e-13	266	290	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++CkF+H+ XP_023919683.1 266 GEKECPYYMRTGSCKYGANCKFNHP 290 7899********************9 PP
4	zf-CCCH	26.6	1e-08	400	426	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+ ++Ck++H++ XP_023919683.1 400 PGQPECSYYLKTGDCKFKSNCKYHHPK 426 5789*********************96 PP
5	zf-CCCH	32	2.1e-10	448	471	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++++ +G+Ck+G+ CkF H+ XP_023919683.1 448 QNICSHYSLYGICKFGPACKFDHP 471 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MMGSSESISV PNSNTNTKGL ELGFDSSQSP NPNPDLDNQT LPDPKVEEQE LNEKLERLDL 60 KEEPESKKKS EDEEEEEKDG SFGLKEVERE KSDLNEEEEE EEEKRGGGSE WSYGNENENE 120 DEVVIGIDKV ILESGGGGGG GSGGSGSGDE GEKKGERNGS GKKFQYQFPV RPEAEDCSFY 180 LKTGTCKFGS NCRFNHPVKR KNQAIKDKVK EKEELAERPG QLECKYYLRS GGCKFGKACR 240 YNHTRGKTTG STFLELNFLG LPIRPGEKEC PYYMRTGSCK YGANCKFNHP DPTAVAGGDP 300 SSGFGNGGSV SLGASQSSVT SWSPPRAMNE NSPFVPVVLS PTPGVPPQNS DWNGYQAPVY 360 TPERTINLPP PYLMNPPTTQ TNLFSHQLQQ IQFEDYPERP GQPECSYYLK TGDCKFKSNC 420 KYHHPKNRNV KSPPCALSDK GLPLRPEQNI CSHYSLYGIC KFGPACKFDH PIDPPSSPMT 480 GVDQHSSYAI TTENAGVAGS GSGSDSTLQQ LV

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MMGSSESISV PNSNTNTKGL ELGFDSSQSP NPNPDLDNQT LPDPKVEEQE LNEKLERLDL  60
KEEPESKKKS EDEEEEEKDG SFGLKEVERE KSDLNEEEEE EEEKRGGGSE WSYGNENENE  120
DEVVIGIDKV ILESGGGGGG GSGGSGSGDE GEKKGERNGS GKKFQYQFPV RPEAEDCSFY  180
LKTGTCKFGS NCRFNHPVKR KNQAIKDKVK EKEELAERPG QLECKYYLRS GGCKFGKACR  240
YNHTRGKTTG STFLELNFLG LPIRPGEKEC PYYMRTGSCK YGANCKFNHP DPTAVAGGDP  300
SSGFGNGGSV SLGASQSSVT SWSPPRAMNE NSPFVPVVLS PTPGVPPQNS DWNGYQAPVY  360
TPERTINLPP PYLMNPPTTQ TNLFSHQLQQ IQFEDYPERP GQPECSYYLK TGDCKFKSNC  420
KYHHPKNRNV KSPPCALSDK GLPLRPEQNI CSHYSLYGIC KFGPACKFDH PIDPPSSPMT  480
GVDQHSSYAI TTENAGVAGS GSGSDSTLQQ LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-134	C3H family protein