PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G48440.1
Common NameT29H11.40
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 448aa    MW: 49863.9 Da    PI: 5.3477
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G48440.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.5e-13113136326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   e C+f++rtG Ck+G++CkF+H+
  AT3G48440.1 113 AEDCSFYMRTGSCKFGSSCKFNHP 136
                  689********************9 PP
2zf-CCCH30.94.8e-10163183525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                   C++++rtG CkyG++C+F+H
  AT3G48440.1 163 DCKYYFRTGGCKYGETCRFNH 183
                  5******************** PP
3zf-CCCH41.52.2e-13205230126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C++++r+G CkyG+ CkF+H+
  AT3G48440.1 205 PGEVECPYYMRNGSCKYGAECKFNHP 230
                  5789*********************9 PP
4zf-CCCH21.83.3e-07348373227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG Ck+  +Ck++H++
  AT3G48440.1 348 DQPECSYYMKTGDCKFKFNCKYHHPK 373
                  689*********************96 PP
5zf-CCCH352.4e-11395418326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C +++r+G+Ck+G+ C+F H+
  AT3G48440.1 395 QNICTYYSRYGICKFGPACRFDHS 418
                  679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-7110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6112137IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-11113136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5116135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014158185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422158186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6163186IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8163183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5164184IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7204231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516204232IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-11206230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5208231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5210229IPR000571Zinc finger, CCCH-type
SMARTSM003560.16346373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056346374IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4348373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5350376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6390418IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511392420IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5392419IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8395418IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4397419IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVNSEEIADG FEPKPVSRSY SGDSSHDRSL SDLNHAAEDL SDKLKNVGLN EVTKEQSEKM  60
MSVSESNGGL DSNAVVTINQ EEEEEEEDRD GYGYGDGWSE NESENVYPVR PGAEDCSFYM  120
RTGSCKFGSS CKFNHPLARK FQIARDNKVR EKEDDGGKLG LIDCKYYFRT GGCKYGETCR  180
FNHTIPKSGL ASAPELNFLG LPLRPGEVEC PYYMRNGSCK YGAECKFNHP DPTTIGGTDS  240
PSFRGNNGVS IGTFSPKATF QASSTSWSSP RHVNGTSPFI PVMLSQTHGV TSQNPEWNGY  300
QASVYSSERG VFSPSTTYLM NNSSAETSML LSQYRHQMPA EEFPERPDQP ECSYYMKTGD  360
CKFKFNCKYH HPKNRLPKLP PYALNDKGLP LRPDQNICTY YSRYGICKFG PACRFDHSVQ  420
PPYSTESSQA IVEPPQVSAN GNESDGWN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.502580.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184086310.0
Genevisible252359_at0.0
Expression AtlasAT3G48440-
AtGenExpressAT3G48440-
ATTED-IIAT3G48440-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G48440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G48440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331390.0BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190414.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7LRW70.0D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRINGAT3G48440.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Representative plantOGRP9141714
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  4. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]