PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023910553.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 342aa MW: 37593.4 Da PI: 5.6774

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023910553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.5	7.5e-10	18	54	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtvv 40 + C+ +++ ++ lfC+ ++++lC +C ++ H++H++v XP_023910553.1 18 KLCDSCKSDPAALFCRVDSVFLCLTCDSKLHSRHERV 54 68********************************975 PP
2	zf-B_box	28.8	2.5e-09	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C + +H+ H++vp+ XP_023910553.1 54 VWMCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplarrHERVPV 99 689****************************6689999999986 PP
3	CCT	69.9	6.6e-24	268	311	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_023910553.1 268 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 311 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGIEPTASTL KTWGVAAKLC DSCKSDPAAL FCRVDSVFLC LTCDSKLHSR HERVWMCEVC 60 EQAPASVTCK ADAAALCVTC DSDIHSANPL ARRHERVPVE PFFDSAESVI KSGAPLTDFL 120 VVPTDHNESP EAGSWVLPNQ NFVEDPDVKP ADLLFTAEMN PFLDFEYPNS FHNSGTDSVV 180 PVQAKPVSAP ISETCFDIEF CKSKLSAFNY PSHSLSQSVS SSEVGVVPDG NSMSDISYPF 240 GRNMSVDPNV PVSGTTAQAA TQLCGTDREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR 300 PRIKGRFAKR TEMIESDVDS LFKSVSTAAF ITEAQYGVVP TF

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGIEPTASTL KTWGVAAKLC DSCKSDPAAL FCRVDSVFLC LTCDSKLHSR HERVWMCEVC  60
EQAPASVTCK ADAAALCVTC DSDIHSANPL ARRHERVPVE PFFDSAESVI KSGAPLTDFL  120
VVPTDHNESP EAGSWVLPNQ NFVEDPDVKP ADLLFTAEMN PFLDFEYPNS FHNSGTDSVV  180
PVQAKPVSAP ISETCFDIEF CKSKLSAFNY PSHSLSQSVS SSEVGVVPDG NSMSDISYPF  240
GRNMSVDPNV PVSGTTAQAA TQLCGTDREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR  300
PRIKGRFAKR TEMIESDVDS LFKSVSTAAF ITEAQYGVVP TF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-113	CO-like family protein