PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026443086.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 377aa MW: 42696.8 Da PI: 5.3801

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026443086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.5	1e-24	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien+ nrq t+skRr gi+KKA+EL v Cda+++v +fsstgkl+ey XP_026443086.1 9 KYIENTPNRQATYSKRRSGIMKKAHELTVRCDAQICVTMFSSTGKLHEYV 58 579**********************************************7 PP
2	K-box	46.6	1.4e-16	71	169	1	98
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yq+ + ++l+ea++e l++el ++ + L++e+R++ G+ dL++Ls++eL Le++L slk R++K+++l++ ++ +k + l+e+ k+L XP_026443086.1 71 YQRETCRDLWEAEHEALEEELIMQQEIGSRLKKEIRQRTGQdDLSELSIEELGGLEKDLAGSLKILRERKEHVLTSRTNIFGRKVRCLEEARKRL 165 67788889***********9999999********637************************************************99 PP K-box 95 rkkl 98 + + XP_026443086.1 166 LRSV 169 8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGRAKIEIKY IENTPNRQAT YSKRRSGIMK KAHELTVRCD AQICVTMFSS TGKLHEYVSP 60 STTLKEFVDR YQRETCRDLW EAEHEALEEE LIMQQEIGSR LKKEIRQRTG QDDLSELSIE 120 ELGGLEKDLA GSLKILRERK EHVLTSRTNI FGRKVRCLEE ARKRLLRSVH AKKVEPYYPV 180 PAENEGDHYP EYAQKQEQQF FSAVPANKER DQQPNYGAAS SSVRREFIND RGGDCESSEI 240 TFQQLQPSHT NLNDEAGGAC QSSYMIRQTD GLVTISNMDH LPGYGSGENS ITLDLDITGN 300 LYLVGADHVN HDGLDISVKI VCLIFVSALI WPVCPIIWAR HGESSSRSKA EKEGTRDGEA 360 EKETTTDADL ELEEKLV

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGRAKIEIKY IENTPNRQAT YSKRRSGIMK KAHELTVRCD AQICVTMFSS TGKLHEYVSP  60
STTLKEFVDR YQRETCRDLW EAEHEALEEE LIMQQEIGSR LKKEIRQRTG QDDLSELSIE  120
ELGGLEKDLA GSLKILRERK EHVLTSRTNI FGRKVRCLEE ARKRLLRSVH AKKVEPYYPV  180
PAENEGDHYP EYAQKQEQQF FSAVPANKER DQQPNYGAAS SSVRREFIND RGGDCESSEI  240
TFQQLQPSHT NLNDEAGGAC QSSYMIRQTD GLVTISNMDH LPGYGSGENS ITLDLDITGN  300
LYLVGADHVN HDGLDISVKI VCLIFVSALI WPVCPIIWAR HGESSSRSKA EKEGTRDGEA  360
EKETTTDADL ELEEKLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-35	MIKC_MADS family protein