PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026427156.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 279aa MW: 31611.9 Da PI: 8.8633

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026427156.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.6	9.4e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr+g+lKKA+ELSvLCdaeva+iifsstgkl+e+ss XP_026427156.1 9 KRIENATSRQVTFSKRRAGLLKKAQELSVLCDAEVALIIFSSTGKLFEFSS 59 79***********************************************96 PP
2	K-box	59.9	1e-20	93	178	15	100
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++e++ Lk+ei++L+ ++ ++lG++L L lkeLq+Le+qL++++ ++++K++ll++++++++ +e+++ en+ Lrk++ee XP_026427156.1 93 RQQSKEISILKDEISKLRMTHLRMLGKELMGLGLKELQHLEDQLNEGMLLVKARKDNLLYDELDQSRLQEERAVMENRILRKQVEE 178 45689******************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MGRGKIEIKR IENATSRQVT FSKRRAGLLK KAQELSVLCD AEVALIIFSS TGKLFEFSSS 60 GMKRTLSRYN KCQDNSETTS LVEYDPEPIA MQRQQSKEIS ILKDEISKLR MTHLRMLGKE 120 LMGLGLKELQ HLEDQLNEGM LLVKARKDNL LYDELDQSRL QEERAVMENR ILRKQVEELQ 180 ALVPSTERTR PPYLEFHSMD RKPSSHTKHG LLSPKGVCHC SSEKRSSERH DDSDTSLHLG 240 LAPDGYYKKK AAERASAERV SAERASSSSN DSDTPMALS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	1e-64	MIKC_MADS family protein