PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP042962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 21750 Da PI: 8.004 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.1 | 9.5e-13 | 101 | 131 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA ELS++C+ e+aviifs+tgkl+++ss PCP042962.1 101 FKKAGELSIMCESEAAVIIFSQTGKLFDFSS 131 9****************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence |
MGLSSTLNAT KLKKKKNLQL FFLDLVPLTS LINEVPILSF TVQAHRTVHD EQIFNYHTIV 60 ENIMHGVGRI GENDEGEDQD QEDRLLAGKA SDLLKDEKRD FKKAGELSIM CESEAAVIIF 120 SQTGKLFDFS SSRLCFSGTT FSTTYLHWHD CVLKLLRTPV ELTSFKATSA LRLAAQKIKF 180 SRAKLKGDCE KLH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 2e-10 | MIKC_MADS family protein |