PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028452.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 371aa MW: 40817.2 Da PI: 7.7139

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028452.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00089	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PCP028452.1 155 YECKTCNRTFPSFQALGGHRASH 177 99**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MEAAGGDHHH QEDVMILGCK EQHSNNINIM KGKRTKRLRP QSPIPFAIPT NSSSPEGGTG 60 RGGGDGGENN NDCINSTNLS PTTSAELFQD STSEEEDMAN CLILLAQGQS RAASSSPNHH 120 HQPPNDHITT TSRKFLESTT VTAGKAAGAA GYYVYECKTC NRTFPSFQAL GGHRASHKKL 180 KVNIGDDPKN KHFGIGLLPP SDEDQDTQSL KNNIFHRNNI NTSSSPLSLH LSNRGLVLSS 240 NKSSPKIHEC SICGAEFMSG QALGGHMRRH RAPIGATNTT LSLTPPPVSA AFESHQQQHK 300 HQQQQPQLPM KKQKNMLNLD LDLNLPAPSE DDHHKETKFV FASNQQQQQQ QQQEQQQQER 360 LRTQILVDCH Y

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MEAAGGDHHH QEDVMILGCK EQHSNNINIM KGKRTKRLRP QSPIPFAIPT NSSSPEGGTG  60
RGGGDGGENN NDCINSTNLS PTTSAELFQD STSEEEDMAN CLILLAQGQS RAASSSPNHH  120
HQPPNDHITT TSRKFLESTT VTAGKAAGAA GYYVYECKTC NRTFPSFQAL GGHRASHKKL  180
KVNIGDDPKN KHFGIGLLPP SDEDQDTQSL KNNIFHRNNI NTSSSPLSLH LSNRGLVLSS  240
NKSSPKIHEC SICGAEFMSG QALGGHMRRH RAPIGATNTT LSLTPPPVSA AFESHQQQHK  300
HQQQQPQLPM KKQKNMLNLD LDLNLPAPSE DDHHKETKFV FASNQQQQQQ QQQEQQQQER  360
LRTQILVDCH Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	3e-44	C2H2 family protein