PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G04390.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 362aa    MW: 39794.1 Da    PI: 7.9463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G04390.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042153175123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  AT5G04390.1 153 YQCKTCDRTFPSFQALGGHRASH 175
                  9***********99999998887 PP
2zf-C2H213.10.00028229251123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  AT5G04390.1 229 HECGICGAEFTSGQALGGHMRRH 251
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-12152177IPR007087Zinc finger, C2H2
SuperFamilySSF576677.65E-9152175No hitNo description
SMARTSM003550.028153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SuperFamilySSF576677.65E-9224251No hitNo description
Gene3DG3DSA:3.30.160.607.3E-4227253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11228253IPR007087Zinc finger, C2H2
SMARTSM003550.047229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93229253IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG  60
NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI ANCLILLAQG HSLPHNNHHL  120
PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA  180
ASFYSNLDLK KNTYANDAVS LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS  240
GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK  300
KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC  360
HY
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible245705_at0.0
Expression AtlasAT5G04390-
AtGenExpressAT5G04390-
ATTED-IIAT5G04390-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G04390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G04390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038850.0BT003885.1 Arabidopsis thaliana clone RAFL15-10-C05 (R20610) putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankBT0050310.0BT005031.1 Arabidopsis thaliana clone U20610 putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196059.10.0C2H2-type zinc finger family protein
TrEMBLQ84K310.0Q84K31_ARATH; C2H2-type zinc finger family protein
STRINGAT5G04390.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Representative plantOGRP23501035
Publications ? help Back to Top
  1. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  2. Ciftci-Yilmaz S,Mittler R
    The zinc finger network of plants.
    Cell. Mol. Life Sci., 2008. 65(7-8): p. 1150-60
    [PMID:18193167]
  3. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  4. Bowen AJ, et al.
    PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors.
    J. Mol. Biol., 2010. 395(5): p. 937-49
    [PMID:19962994]