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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP022935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24533.1 Da PI: 6.7935 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78 | 6.8e-25 | 19 | 62 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELS+LC+ evaviifs+tgkl+++ss PCP022935.1 19 ARQVTFSKRRRGIFKKAEELSILCESEVAVIIFSQTGKLFDFSS 62 79****************************************96 PP | |||||||
2 | K-box | 28.6 | 6e-11 | 88 | 162 | 14 | 88 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 + +++ +L ke+e r++R+l+GedL++L+l eLq+Le+ +e s ++ ++K + l+e ++l++++ +l+ PCP022935.1 88 LQLEKENTIRLSKELEDKTRKLRQLKGEDLHDLDLDELQKLEKLVEASHGRVMETKGDELVEANNQLKQRMVMLS 162 5566777889999999999**************************************************998875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MVKIRKEKIK IRRIDYLPAR QVTFSKRRRG IFKKAEELSI LCESEVAVII FSQTGKLFDF 60 SSSSTKDVIA RYKSHIGEKS NQPMLDQLQL EKENTIRLSK ELEDKTRKLR QLKGEDLHDL 120 DLDELQKLEK LVEASHGRVM ETKGDELVEA NNQLKQRMVM LSARGDIGPT AIKELENLNN 180 GGEEGVTSES ATNVTICSNS PLSLEDDCSD ILSLKLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 5e-34 | MIKC_MADS family protein |