PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP017272.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 302aa    MW: 33248.2 Da    PI: 6.9201
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP017272.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.48.2e-192368147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ede+l + v+++G ++W+ I++ ++ gR++k+c++rw + 
      PCP017272.1 23 KGPWSPDEDEKLRQIVQRYGARNWSVISKSVP-GRSGKSCRLRWCNQ 68
                     79******************************.***********985 PP
2Myb_DNA-binding56.37.3e-1877119347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde+++ a++++G++ W+tIar ++ gRt++ +k++w++ 
      PCP017272.1  77 AFTPEEDEIIAGAHAKYGNK-WATIARLLN-GRTDNAIKNHWNST 119
                      79******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MDQQESAAME SSAMVQRELD RVKGPWSPDE DEKLRQIVQR YGARNWSVIS KSVPGRSGKS  60
CRLRWCNQLS PEVEHRAFTP EEDEIIAGAH AKYGNKWATI ARLLNGRTDN AIKNHWNSTL  120
KRKFSALSPN EDGMAIDEGL LRPDKKTATA AVSFSGLCYS PGSPSGSDVS ESDVPATSSS  180
QVFRPVARTA AIVTRESPPS QTEWCEPSTL LTLSLPGAEA AMHELPTDES APRRGQRTAS  240
LQPEKETNVN NSNTMSYGPE FMSVMQEMVR KEVRSYMEGV VCSQSEGVRN AGVKRIGISR  300
LD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-85MYB family protein