PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP017259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20661.2 Da PI: 5.0411 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.3 | 4.7e-14 | 9 | 52 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+i nk + tfskRr+g++ KA L+ L++a avi fs+ + PCP017259.1 9 KKITNKNYLKATFSKRRKGLFRKATDLCCLTGATLAVIAFSPGN 52 679999999********************************965 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MGKNRIDIKK ITNKNYLKAT FSKRRKGLFR KATDLCCLTG ATLAVIAFSP GNNPFLFGHP 60 SAESVIDRFL GERARCASDD GGEEVLGSAS AGNEHQDLES SREEVKEGSD VMDEEKGSLW 120 WEKPIEEGLE LPELKKYKSL LERLRENAAI KLDEMNRREL CTKDYLGLNF DIGSSSSTPA 180 DERDV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-31 | M-type_MADS family protein |