PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP013248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 222aa MW: 24843.5 Da PI: 10.721 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 43.1 | 9.2e-14 | 115 | 204 | 10 | 99 |
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + +++++k ++P+ r+++i+++++ +is +a l+ ka e f+ ++ s + + +r+++ +a++v++ + +dfl d vp++ PCP013248.1 115 VADEEEVKAYTFPMERVRRIIRSEDSDLRISNDAVFLINKATEKFLEKFCEESHACCVKDRRKAIAYKHLATVVSKRKRYDFLSDYVPEK 204 5567899****************999999**********************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MATPKKDIPP KKTKEAKKPS TKSPPPKKTQ QTKKPTTAKA KTPEKKKPSN AKKSTNINKI 60 TSNGNARESD VEAVPSPSSE SRRGAEQNGG KITKTPTTKS KKGKEKGKRK REGEVADEEE 120 VKAYTFPMER VRRIIRSEDS DLRISNDAVF LINKATEKFL EKFCEESHAC CVKDRRKAIA 180 YKHLATVVSK RKRYDFLSDY VPEKVKAEDA LAKRKLAEAK AG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 193 | RRKAIAYKHLATVVSKRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-29 | NF-YC family protein |