PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008928.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 645aa MW: 70000.5 Da PI: 7.1085

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008928.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	372	430	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ PCP008928.1 372 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 430 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MAKGSGLSID SDPFSFSLHN PIVLNSFQED RYNHHHLPPP STTKRQQLCH HHSSLMLMDN 60 STTIHRRSPP PPPPPTTIQF AVNLNCSHDD DVQHSPGSPP PSNEQRKVID ERDFFADSKN 120 RLDHEKSVVS TDPADKMDLH GPTDMEFNVN TGLNLLLTNT SSDQSVVDNG ISSNKDDKRA 180 KSELTVLQAD LKRMNAENQR LKGMLNQVTT NYNALQVHLL NLMQSQKADQ NGSAAEGHGV 240 AVEEKKIMNG NKTSLVVPRQ FMDLGLAANN GDADEHSQSS SDERSRGERS GSLGDNVKAA 300 GHSDDQGIAF DHEKKDFERR IRREESPDQP PQSWGPNKVP RLNSPKEVDQ TEATMRKARV 360 SVRARSEAPM ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA AGCPVRKQVQ RCAEDRTILI 420 TTYEGNHNHP LPPAAMAMAS TTSSAARMLL SGSMPSADGL MDSNFLTRTL LPCSSSMATI 480 SASAPFPTVT LDLTQSPNPL QQLQRPPGQF NIPFPNPNQN FTNGPASLLP QIFSQALYNQ 540 SKFSGLQMSH DTDRAAGQLG HQSQPGQQQG SLADLTAATA AIAADPNFTA ALAAAITSII 600 GNAHPNNDVA NPATNSNNNN ANGNATSNSN GNCNNKLSNP SFSGN

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MAKGSGLSID SDPFSFSLHN PIVLNSFQED RYNHHHLPPP STTKRQQLCH HHSSLMLMDN  60
STTIHRRSPP PPPPPTTIQF AVNLNCSHDD DVQHSPGSPP PSNEQRKVID ERDFFADSKN  120
RLDHEKSVVS TDPADKMDLH GPTDMEFNVN TGLNLLLTNT SSDQSVVDNG ISSNKDDKRA  180
KSELTVLQAD LKRMNAENQR LKGMLNQVTT NYNALQVHLL NLMQSQKADQ NGSAAEGHGV  240
AVEEKKIMNG NKTSLVVPRQ FMDLGLAANN GDADEHSQSS SDERSRGERS GSLGDNVKAA  300
GHSDDQGIAF DHEKKDFERR IRREESPDQP PQSWGPNKVP RLNSPKEVDQ TEATMRKARV  360
SVRARSEAPM ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA AGCPVRKQVQ RCAEDRTILI  420
TTYEGNHNHP LPPAAMAMAS TTSSAARMLL SGSMPSADGL MDSNFLTRTL LPCSSSMATI  480
SASAPFPTVT LDLTQSPNPL QQLQRPPGQF NIPFPNPNQN FTNGPASLLP QIFSQALYNQ  540
SKFSGLQMSH DTDRAAGQLG HQSQPGQQQG SLADLTAATA AIAADPNFTA ALAAAITSII  600
GNAHPNNDVA NPATNSNNNN ANGNATSNSN GNCNNKLSNP SFSGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-106	WRKY family protein