PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP007024.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 296aa    MW: 33363.4 Da    PI: 5.2459
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP007024.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.4e-28958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fss+g+l  +s
  PCP007024.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSSSGRLSLFS 58
                 79*******************************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSS SGRLSLFSGN  60
KSIEETLARY INLPANQRGR PMSGTDSDQL EEIQQDIVCC KSQLEEMGNR LRIFEAEDLS  120
EIRTLHDAEY REQILEETLK RLRVRKQVLE EYDSSATILQ LPTATTNIHE LVTGSPHNIL  180
VDWLLQGDPQ VQIVNFLNSN GSLPLRDQPA ESRFDAIASQ SALVSGQNRS VDEHRSTGKG  240
LEDDNNGLQR QELGQVIDVN FSAWKDFYPT ASSSGRGLYM SSQFNPPPSI LHPNQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-29MIKC_MADS family protein