PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002392.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 1069aa MW: 118886 Da PI: 7.4828

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002392.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61	1.4e-19	30	78	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kr+e+k +r+vtfskR+ g++ KA ELSvL++ae a i++ss+gk++ + PCP002392.1 30 KRVEDKNKRHVTFSKRKRGLFNKAAELSVLTGAETAAIVVSSNGKVFCF 78 799******************************************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 1069 aa Download sequence
MAKSPDNKIT DIGTTNGKKE SKGRRRVEIK RVEDKNKRHV TFSKRKRGLF NKAAELSVLT 60 GAETAAIVVS SNGKVFCFGS PSPDTVIERY LSDNTFLLPA GQSDNHLQNN NIHHSSNKKQ 120 IEDYVEASRR LKEAKVLKGG KKNNSNNNGG DGGCSYGWWE RPIGMMTSLE ELEEYRDALY 180 KLKHNVEIEL LLEDHGLMGF VDGSHSCPAR FNVPTSRDST VSSTDALSPI KSDQFKIWKM 240 QDQALMQLLT ATLSPSVVSC AVGSTSAHDL WLIAEETMVE NVLITLVLFA IVARNNGSDS 300 KSYGDSSKAE DSSNGNSYRG SSQSHFYSSG NSGFKSSYSK NKNKGKFQYN SQSRFGNSKN 360 NYGNYTVNPA PGILGQSHIE DSLSRTMQIT TMPDIMPSPH SIQQSGTHSP LQSIITSTNQ 420 QSSSSFLVAP EIPNGSCVDH STKSSSEIPN DNGVVMQNEF QCRMSFNLTV CSDERVVRMG 480 DPSGSSRVSS QKQNREGMVG AQSGQYRDTV VERAREVVPP SWDVTVGHSV VILLIYVDDI 540 IITGSDSETI ASVIKALTKE FDIKDLDLLV KANMVHSKPC STPCLPYNRR FGSNNHGQSE 600 IGDLFRIKKE NEDMHRLWTF PRNQSWWVTS LLDGCCKRVL PQDGRARLPL KKILVVNDDK 660 EYPRLLNYEK LFEVCFYYGK KRFERHLCPA EFNNDGCLLV DRIFEEGPVI CPANFPARNN 720 NRGRSSSRRD GRSYDNVVKC NRTWVSRADL VSKWCPGAEG GSRSGTVGEK SDAEILANVS 780 NNKGKSVKEV TDLKAGDEVF METEVREFEQ MQFGGKTQQM ENGVASSWVL FIGKFVEREM 840 SRFRGMLQAS LNATKKALTW NVEDLVPPTE RFIFNLNSKD ELKKWHLYSD SEYGGLSSAS 900 LEVPDNENGP TGIFLGNLSL DFIEGAKLKI NRSGFCGMRS KKFDGSIDLD PYDTIALKVK 960 GDGRCYISTI YTENWVNSPG QEEDNSWQAF VFVPKDNWVL GKSENTELIP LALYLPTWRG 1020 NVIDAEVEMN PSRVVGMSLS VNAEGGLPGA RTGAGDFKLE IDWIKALRT

Sequence ? help Back to Top

Protein Sequence Length: 1069 aa Download sequence

MAKSPDNKIT DIGTTNGKKE SKGRRRVEIK RVEDKNKRHV TFSKRKRGLF NKAAELSVLT  60
GAETAAIVVS SNGKVFCFGS PSPDTVIERY LSDNTFLLPA GQSDNHLQNN NIHHSSNKKQ  120
IEDYVEASRR LKEAKVLKGG KKNNSNNNGG DGGCSYGWWE RPIGMMTSLE ELEEYRDALY  180
KLKHNVEIEL LLEDHGLMGF VDGSHSCPAR FNVPTSRDST VSSTDALSPI KSDQFKIWKM  240
QDQALMQLLT ATLSPSVVSC AVGSTSAHDL WLIAEETMVE NVLITLVLFA IVARNNGSDS  300
KSYGDSSKAE DSSNGNSYRG SSQSHFYSSG NSGFKSSYSK NKNKGKFQYN SQSRFGNSKN  360
NYGNYTVNPA PGILGQSHIE DSLSRTMQIT TMPDIMPSPH SIQQSGTHSP LQSIITSTNQ  420
QSSSSFLVAP EIPNGSCVDH STKSSSEIPN DNGVVMQNEF QCRMSFNLTV CSDERVVRMG  480
DPSGSSRVSS QKQNREGMVG AQSGQYRDTV VERAREVVPP SWDVTVGHSV VILLIYVDDI  540
IITGSDSETI ASVIKALTKE FDIKDLDLLV KANMVHSKPC STPCLPYNRR FGSNNHGQSE  600
IGDLFRIKKE NEDMHRLWTF PRNQSWWVTS LLDGCCKRVL PQDGRARLPL KKILVVNDDK  660
EYPRLLNYEK LFEVCFYYGK KRFERHLCPA EFNNDGCLLV DRIFEEGPVI CPANFPARNN  720
NRGRSSSRRD GRSYDNVVKC NRTWVSRADL VSKWCPGAEG GSRSGTVGEK SDAEILANVS  780
NNKGKSVKEV TDLKAGDEVF METEVREFEQ MQFGGKTQQM ENGVASSWVL FIGKFVEREM  840
SRFRGMLQAS LNATKKALTW NVEDLVPPTE RFIFNLNSKD ELKKWHLYSD SEYGGLSSAS  900
LEVPDNENGP TGIFLGNLSL DFIEGAKLKI NRSGFCGMRS KKFDGSIDLD PYDTIALKVK  960
GDGRCYISTI YTENWVNSPG QEEDNSWQAF VFVPKDNWVL GKSENTELIP LALYLPTWRG  1020
NVIDAEVEMN PSRVVGMSLS VNAEGGLPGA RTGAGDFKLE IDWIKALRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	6e-21	M-type_MADS family protein