PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000908.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 611aa MW: 65957 Da PI: 7.4145

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000908.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.4e-30	353	411	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ PCP000908.1 353 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 411 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MDKGWGLTLD SDSFGFLLNK TPTAAVKLDH RHNNNKRNSF FGGERMFSGM EFPVKLGSRE 60 EQTASQPSND NDRMVVDEVD FFSDRKNKLK SNSTDDHHQD SRSNDAMSVK KENWTGLDVN 120 TGLHLVTANT GSDQSMVDDG ISSDRADNKR AKNHELAQLQ VELQRMNVEN QRLKEMLGQV 180 TNNYSALQMH LAAVVQQQHN HTTAAPADQS SQLHHDQNAE AKADQGKKQV LVPRQFLNLG 240 PRATTETTDD QVSNSSSEAK TGSASPPQNI NEVASPKNGQ IGPLDPANSN TFRDGKRVGR 300 DESPESESQG WVPDKVPKLN NSAAPKPIDQ STEATMRKAR VSVRARSEAS MITDGCQWRK 360 YGQKMAKGNP CPRAYYRCTM AVGCPVRKQV QRCAEDRTIL ITTYEGNHNH PLPPAAMAMA 420 STTTAAVSML LSGSMSSADG MNMNPNNLLA RAILPCSSSV ATISASAPFP TVTLDLTTTP 480 SQVQRPNTPF QVPNFPGQPP SFGAASQQLP QIFGQALYNQ SKFSELQLSQ DIMGSTSSQQ 540 QMQQTQSSSF ADTVSAITAD PSFTAALAAA ITSIIGGGAH PSNTTTNSAS PISNNSSGAN 600 NNNKISSFPG N

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MDKGWGLTLD SDSFGFLLNK TPTAAVKLDH RHNNNKRNSF FGGERMFSGM EFPVKLGSRE  60
EQTASQPSND NDRMVVDEVD FFSDRKNKLK SNSTDDHHQD SRSNDAMSVK KENWTGLDVN  120
TGLHLVTANT GSDQSMVDDG ISSDRADNKR AKNHELAQLQ VELQRMNVEN QRLKEMLGQV  180
TNNYSALQMH LAAVVQQQHN HTTAAPADQS SQLHHDQNAE AKADQGKKQV LVPRQFLNLG  240
PRATTETTDD QVSNSSSEAK TGSASPPQNI NEVASPKNGQ IGPLDPANSN TFRDGKRVGR  300
DESPESESQG WVPDKVPKLN NSAAPKPIDQ STEATMRKAR VSVRARSEAS MITDGCQWRK  360
YGQKMAKGNP CPRAYYRCTM AVGCPVRKQV QRCAEDRTIL ITTYEGNHNH PLPPAAMAMA  420
STTTAAVSML LSGSMSSADG MNMNPNNLLA RAILPCSSSV ATISASAPFP TVTLDLTTTP  480
SQVQRPNTPF QVPNFPGQPP SFGAASQQLP QIFGQALYNQ SKFSELQLSQ DIMGSTSSQQ  540
QMQQTQSSSF ADTVSAITAD PSFTAALAAA ITSIIGGGAH PSNTTTNSAS PISNNSSGAN  600
NNNKISSFPG N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-145	WRKY family protein