PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000883.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 359aa MW: 40268.2 Da PI: 8.4447

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000883.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	43	91	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl PCP000883.1 43 KGPWSPEEDAKLKEYIEKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 91 79*********************************************97 PP
2	Myb_DNA-binding	41.6	2.8e-13	98	140	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ ++++ G++ W+ Ia+ ++ gRt++++k++w++ PCP000883.1 98 GEFSDEEDRIICNLFTNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 140 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEPEGSEFPK DLVLGRDRNI HIRRTKSIPL DNVRCNVQAN VKKGPWSPEE DAKLKEYIEK 60 YGTGGNWIAL PQKAGLRRCG KSCRLRWLNY LRPNIKHGEF SDEEDRIICN LFTNIGSRWS 120 IIAAQLPGRT DNDIKNYWNT KLKKKLMGIS ILPSQLLKSH PSLLLQTSST SSSPLSYRGS 180 NTSTTFYTQT RSFTGTLEPI PFSQSLMSSS STNSAPSALQ IPQESFVGRH MQQQHYQVKD 240 NILMFGGEAS CSSSDGSCSN HQIREREYEF GGAYGGRNGG ATNGEVKLQM GLQNYNFFNG 300 VGGEQKIMQN NSSGNGMWED QAGLDYGLEE IKQLISSTGS CNNFLFDENK TEEKVMMYY

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEPEGSEFPK DLVLGRDRNI HIRRTKSIPL DNVRCNVQAN VKKGPWSPEE DAKLKEYIEK  60
YGTGGNWIAL PQKAGLRRCG KSCRLRWLNY LRPNIKHGEF SDEEDRIICN LFTNIGSRWS  120
IIAAQLPGRT DNDIKNYWNT KLKKKLMGIS ILPSQLLKSH PSLLLQTSST SSSPLSYRGS  180
NTSTTFYTQT RSFTGTLEPI PFSQSLMSSS STNSAPSALQ IPQESFVGRH MQQQHYQVKD  240
NILMFGGEAS CSSSDGSCSN HQIREREYEF GGAYGGRNGG ATNGEVKLQM GLQNYNFFNG  300
VGGEQKIMQN NSSGNGMWED QAGLDYGLEE IKQLISSTGS CNNFLFDENK TEEKVMMYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-69	MYB family protein