PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G12810.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 113aa    MW: 12626.3 Da    PI: 10.7148
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G12810.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.98.6e-11935127
                     S---SHHHHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeEL 27
                     krien++n qvtfskRr  il KA E+
  ONIVA12G12810.1  9 KRIENSTNHQVTFSKRRSRILMKAREI 35
                     79************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
MGRGKIEIKR IENSTNHQVT FSKRRSRILM KAREIYICKK PITWNCNTNS NKAQQQSCIR  60
DEQIEVQDLI SSSAKLKSGS SSGDSGATTV DRRLAAVAHW ESNPAVRIHQ ASA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-12MIKC_MADS family protein