PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G01580.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21194.4 Da    PI: 11.2967
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G01580.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.63e-221966249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ri+nk +rqvtf+kRr g++KKA+EL  L++a vav++fs+  ++y +
  ONIVA12G01580.1 19 RIDNKERRQVTFTKRRGGLFKKASELALLTGASVAVVVFSPAKHVYAF 66
                     8*********************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MVHPLGRTSM GRQRIEIRRI DNKERRQVTF TKRRGGLFKK ASELALLTGA SVAVVVFSPA  60
KHVYAFGHPS VDAVLRSYAS VPGEAAAVAP VPVHGGSGGE DVDLLGLRLA ADDTGAQVAA  120
EHARMRDVAA RIVQAKAGRR FWWEADVDAL GEAELLEFFT ALKKLRDNVG RHANALLAPQ  180
PPPLPLQQKQ RRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-28M-type_MADS family protein