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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G17790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 315aa MW: 35932 Da PI: 7.3234 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.9 | 4.8e-27 | 112 | 162 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr+gilKKA E+ vLCdaev v+ifss gkl +y++ ONIVA05G17790.1 112 KRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCT 162 79***********************************************96 PP | |||||||
2 | K-box | 58.2 | 3.6e-20 | 174 | 272 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqR..hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 yq++sgk l+++k++sl+ e++++kke++n+q e+R h++GedL+sL+ keL +e++L+++ + R+k +++++++ ++ ++ e+e++ ONIVA05G17790.1 174 YQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRlvHMKGEDLNSLQPKELIAIEEALNNGQANLRDKMMDHWRMHKRNEKMLEDEHKMLAF 267 79999999************************998888********************************998888888888888888777766 PP K-box 93 aLrkk 97 + +++ ONIVA05G17790.1 268 RVHQQ 272 66665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence |
MHHARERERE RAVSISGAPA LPHRESPPHL HSFHGDLPPP PPPLHPPLLL HSNHGVQSST 60 PPTIPTLKTG RTATPQPSCF FESEVKICFL VCVLGVEEEE ELDMGRGKIE IKRIENSTNR 120 QVTFSKRRAG ILKKAREIGV LCDAEVGVVI FSSAGKLSDY CTPKTTLSRI LEKYQTNSGK 180 ILWDEKHKSL SAEIDRVKKE NDNMQIELRL VHMKGEDLNS LQPKELIAIE EALNNGQANL 240 RDKMMDHWRM HKRNEKMLED EHKMLAFRVH QQEVELSGGI RELELGYHHD DRDFAASMPF 300 TFRVQPSHPN LQQEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 7e-71 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA05G17790.1 |