PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G35980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22529.8 Da PI: 9.7074 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.1 | 7.5e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++ ONIVA03G35980.1 9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 59 79***********************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIIFST KGKLYEYATD 60 SCMDKILERY ERYSYAEKVL ISAESDTQGN WCHEYRKLKA KSQLMLESIN ELQRKNPCSF 120 LQLVEKQKVQ KQQVQWDQTQ PQTSSSSSSF MMREALPTTN ISNYPAAAGE RIEDVAAGQP 180 QHVRIGLPPW MLSHING |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 4e-56 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G35980.1 |