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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G01420.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 271aa MW: 30804.3 Da PI: 9.7655 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.5 | 4.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s ONIVA03G01420.4 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 70.4 | 5.4e-24 | 119 | 212 | 6 | 99 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 g+++ +++ e+ + +++ L k++e L++ +R+llGe+L+++s++eL++Le +Le+sl +iR +K++ll eq+ +l++ke +l+++n++Lr+k + ONIVA03G01420.4 119 GNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCK 212 4557788899*********************************************************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence |
MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASA 60 RYVTPKSIYI IKQLITDPAT LKMVHQHGSI DVVRWIQHGN GVGSKTIERY RTYTKENIGN 120 KTVQQDIEQV KADADGLAKK LEALETYKRK LLGEKLDECS IEELHSLEVK LERSLISIRG 180 RKTKLLEEQV AKLREKEMKL RKDNEELREK CKNQPPLSAP LTVRAEDENP DRNINTTNDN 240 MDVETELFIG LPGRSRSSGG AAEDSQAMPH S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 6e-63 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G01420.4 |