PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G48250.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 23588.2 Da PI: 10.5335 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.1 | 1.5e-25 | 62 | 111 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k rqv fskRr+g++KKA+EL LCdaeva+++fs+ gklyeyss ONIVA01G48250.3 62 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 111 8***********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MGAPHARPSI PSSSSPTSPH HHTTTHTHAR LRFPPPTRGG EGGELGFFGA GMARRGRVQL 60 RRIEDKASRQ VRFSKRRAGL FKKAFELALL CDAEVALLVF SPAGKLYEYS SSSIEGTYDR 120 YQQFAGARRD LNEGSTSINS DENASIHSRL RDISAWSLQN NADESDANQL EKLEKLLTNT 180 LRDTKSKKML AKQNGEGSRS RANSSGSRGQ EEGSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-26 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G48250.3 |