PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0100s0035.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MIKC_MADS

Protein Properties

Length: 227aa MW: 26170.8 Da PI: 9.7423

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0100s0035.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.7	1.5e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKAeEL vLCda+v++i++sst+k++ey+s Kaladp0100s0035.2.p 9 KRIENTTNRQVTYSKRRNGLFKKAEELTVLCDAKVSIIMISSTQKIHEYIS 59 79***********************************************86 PP
2	K-box	91.1	1.9e-30	71	169	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 yqk+s+++++++++e++++ l+k+k+ ++ L++e+R+++Ge+L++Ls++eL+ Leq+++++++ iR++K++ + + +++l+kk ++++e+ Kaladp0100s0035.2.p 71 YQKASNTDVWSKQYERMEETLRKVKEMNKRLRTEIRQRMGECLNDLSFEELRGLEQDMDNAVTAIRARKYKAIGSRTDTLRKKVRNVEEI 160 8999************************************************************************************ PP K-box 91 nkaLrkkle 99 ++L+++le Kaladp0100s0035.2.p 161 YRKLNQELE 169 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KAEELTVLCD AKVSIIMISS TQKIHEYISP 60 GITTKQVVDL YQKASNTDVW SKQYERMEET LRKVKEMNKR LRTEIRQRMG ECLNDLSFEE 120 LRGLEQDMDN AVTAIRARKY KAIGSRTDTL RKKVRNVEEI YRKLNQELEA REEDRHYGLV 180 DNNNSGDYES VIALGPRVFA LHLNPNQSAN MQTCAGGSDL TYTLMN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-89	MIKC_MADS family protein