PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0100s0015.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARF | ||||||||
Protein Properties | Length: 953aa MW: 105322 Da PI: 5.7356 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.4 | 1.9e-25 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv+a++L++gD+v+F Kaladp0100s0015.2.p 147 FCKTLTASDTSTHGGFSVPRRAAEKLfptldytMQPP-T-QELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVSAKRLRQGDSVLFI 234 99*********************999*****954444.4.38************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+v+++r Kaladp0100s0015.2.p 235 --RDEKSQLMVGIRRV 248 ..4577778****996 PP | |||||||
2 | Auxin_resp | 106.1 | 4.1e-35 | 273 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aa aa+++s+F+++YnPr+++s+Fv++++k++ka+ +++s+GmRf m+fete+s +rr++Gt+v v+dldp+rWp+SkWr+++ Kaladp0100s0015.2.p 273 AAYAAANRSPFTIFYNPRQCPSDFVIPMAKFRKAVFgTQISMGMRFGMMFETEESGKRRYMGTIVNVTDLDPLRWPGSKWRNIQ 356 6889******************************988********************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 953 aa Download sequence |
MGSVVEEKIR PGGLPDGAST NLLEEMKMLK ELQDQSGAAK IMNSELWHAC AGPLVSLPQI 60 GGLVYYFPQG HSEQVAVSTK RSATSQIPNY PNLPPQLLCQ VHNVTLHADK ETDEIYAQMS 120 LQPVNTEKDI IPVPEFGRPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPTLDYTM 180 QPPTQELVVR DLHENTWTFR HIYRGQPKRH LLTTGWSLFV SAKRLRQGDS VLFIRDEKSQ 240 LMVGIRRVNR QQTTLPSSVL SADSMHIGVL AAAAYAAANR SPFTIFYNPR QCPSDFVIPM 300 AKFRKAVFGT QISMGMRFGM MFETEESGKR RYMGTIVNVT DLDPLRWPGS KWRNIQVEWD 360 EAGCSDKPNR VSSWDIETPE SLFIFPSLTS GYKRPLTPGF LGAETDWGSL IKRPFVRMPD 420 NGFGNLHPMA SPCSEQLMKM LMKSQMVNHP SNFSAIPVDS SYNRAPVPDG RAMEAVTKQN 480 PDQPMFSRNT LAQIQSSTQP CPAQSAPANS KVLPQVTHQE KTLQVVKSEI ASSEPVAQDH 540 GNQLKSGPHT VENFAPSSMN PPTSVTQPAS LNQQTTQRIL PNPSQAQFQQ VNPWQPHQPM 600 DSSIFQSQPM EAPQTDLSSI NSLLPYLETD EWMLNTPSSY QQLPGVFRSP ASLPIYGYQD 660 SSVVFPEVVN PVMSSIGQDV SEHQLNNVQS LSESDRLIPL PLQGQVNVSS SGFKDLSSDN 720 NPSNSRGVYG CLNYDGRNTS TAVVDHSVPS TFLDGFCKMD DPGFQNAPDC LVSSSQDLQS 780 QITSASLADS HAFSRQDFPD NSGGTSSSNV EFDDSSLLQT NTWQQVAPPM RTYTKVQKTG 840 SVGRSIDVTS FRNYEELRSA IERMFGLEGL LTDPRGSAWK LVYVDYEKDV LLVGDDPWEE 900 FVGCVRCIRI LSPTEVQQMS EEGMKLLNNT AAMQGLRRAL PEGGGSAWDA LA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |