PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0100s0015.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 953aa    MW: 105322 Da    PI: 5.7356
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0100s0015.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.41.9e-25147248199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv+a++L++gD+v+F 
  Kaladp0100s0015.1.p 147 FCKTLTASDTSTHGGFSVPRRAAEKLfptldytMQPP-T-QELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVSAKRLRQGDSVLFI 234
                          99*********************999*****954444.4.38************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+v+++r 
  Kaladp0100s0015.1.p 235 --RDEKSQLMVGIRRV 248
                          ..4577778****996 PP
2Auxin_resp106.14.1e-35273356183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa aa+++s+F+++YnPr+++s+Fv++++k++ka+  +++s+GmRf m+fete+s +rr++Gt+v v+dldp+rWp+SkWr+++
  Kaladp0100s0015.1.p 273 AAYAAANRSPFTIFYNPRQCPSDFVIPMAKFRKAVFgTQISMGMRFGMMFETEESGKRRYMGTIVNVTDLDPLRWPGSKWRNIQ 356
                          6889******************************988********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    
MGSVVEEKIR PGGLPDGAST NLLEEMKMLK ELQDQSGAAK IMNSELWHAC AGPLVSLPQI  60
GGLVYYFPQG HSEQVAVSTK RSATSQIPNY PNLPPQLLCQ VHNVTLHADK ETDEIYAQMS  120
LQPVNTEKDI IPVPEFGRPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPTLDYTM  180
QPPTQELVVR DLHENTWTFR HIYRGQPKRH LLTTGWSLFV SAKRLRQGDS VLFIRDEKSQ  240
LMVGIRRVNR QQTTLPSSVL SADSMHIGVL AAAAYAAANR SPFTIFYNPR QCPSDFVIPM  300
AKFRKAVFGT QISMGMRFGM MFETEESGKR RYMGTIVNVT DLDPLRWPGS KWRNIQVEWD  360
EAGCSDKPNR VSSWDIETPE SLFIFPSLTS GYKRPLTPGF LGAETDWGSL IKRPFVRMPD  420
NGFGNLHPMA SPCSEQLMKM LMKSQMVNHP SNFSAIPVDS SYNRAPVPDG RAMEAVTKQN  480
PDQPMFSRNT LAQIQSSTQP CPAQSAPANS KVLPQVTHQE KTLQVVKSEI ASSEPVAQDH  540
GNQLKSGPHT VENFAPSSMN PPTSVTQPAS LNQQTTQRIL PNPSQAQFQQ VNPWQPHQPM  600
DSSIFQSQPM EAPQTDLSSI NSLLPYLETD EWMLNTPSSY QQLPGVFRSP ASLPIYGYQD  660
SSVVFPEVVN PVMSSIGQDV SEHQLNNVQS LSESDRLIPL PLQGQVNVSS SGFKDLSSDN  720
NPSNSRGVYG CLNYDGRNTS TAVVDHSVPS TFLDGFCKMD DPGFQNAPDC LVSSSQDLQS  780
QITSASLADS HAFSRQDFPD NSGGTSSSNV EFDDSSLLQT NTWQQVAPPM RTYTKVQKTG  840
SVGRSIDVTS FRNYEELRSA IERMFGLEGL LTDPRGSAWK LVYVDYEKDV LLVGDDPWEE  900
FVGCVRCIRI LSPTEVQQMS EEGMKLLNNT AAMQGLRRAL PEGGGSAWDA LA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein