PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0001s0214.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 211aa MW: 23552.3 Da PI: 4.9177 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 25.4 | 3e-08 | 99 | 187 | 11 | 99 |
NF-YC 11 ekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e++++ ++ +P+ ri+ i k++ ed ++s ea ll ka e f+ +l ++ ++ + +r+ + d ++v++ + fl d +p++ Kaladp0001s0214.2.p 99 EEEEEGAKCLFPMNRIRMIAKSEgEDDMRLSHEAIFLLNKASEKFLGHLCEEAYGETVN-QRKNFVAYDHLSSVSKNQRLCFLSDLIPEK 187 45556667889**********983455569************************99985.667777788888999***********9975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MRNTRSTPRK GQKPTTKTKK KGHVSNGDVT EAEVASPATL SSPDSIPEPP YSDSVGSDNK 60 SVAEEEDEVE EGAEEQEVEV VKKKTVLKQN GKKRKVEEEE EEEGAKCLFP MNRIRMIAKS 120 EGEDDMRLSH EAIFLLNKAS EKFLGHLCEE AYGETVNQRK NFVAYDHLSS VSKNQRLCFL 180 SDLIPEKISV EEALKERQLA NCDPRDPTTN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 94 | KKKTVLKQNGKKR |
2 | 83 | 95 | KKKTVLKQNGKKR |
3 | 87 | 95 | LKQNGKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-23 | NF-YC family protein |