PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021301201.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 684aa    MW: 77176.2 Da    PI: 6.6922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021301201.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.33e-831614883346
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     e L+++A+++++++l+la+ +Larl+++ +sp+g+p+qR+a+yf+eAL++ l++      ++ +++ +s+++ +++++a+k+fs + Pi+ f h+
  XP_021301201.1 161 EELIRAADCFDTNELQLAHVILARLNQRlRSPSGKPLQRAAFYFKEALQSLLTG------STRSTRLSSWSEIVQTIKAYKAFSGINPIPMFNHF 249
                     689************************99*************************......777888899999*********************** PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     t+Nqa+lea++g+   +HiiDfdi+ G+Q+++L++++a+R+ ++   +RiT+v+++e   + e++ ++++L +fA+ l+++f++++++ +++e+l
  XP_021301201.1 250 TTNQALLEALDGSaPLIHIIDFDIGLGGQYASLMREMAERNdHSCKFIRITAVVPEE--YAIETRLIKDNLFQFAQDLKIRFQIEFVLLRTFEML 342
                     *************7889************************555669********66..99999******************************* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseer 282
                     +l+++++  gE++a+ l+ +++r l  s++++     +L+ +++++P vvv+v++e  ++ +++sF + f++ le+y+++f+sl+a +    e+ 
  XP_021301201.1 343 SLKAFKFIDGEKTAILLSPSIFRCL--SLNVAA----FLSDLRRVNPSVVVFVDSEvwMESGTTSFRKNFVNGLEFYAMMFESLDAAV-VGGEWV 430
                     ************************9..555555....*******************76677999********************9997.667999 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                     +k+E  ll+++i  +v ++ ++      t+  Wre +  aG+++v+ls++a  qa++ll kv++
  XP_021301201.1 431 RKIETLLLRPRILVAVEAAARR------TAPPWRELFVGAGMRAVHLSQFADFQAECLLGKVQN 488
                     9***********7666555554......899*****************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    
MRVPVTSPQN NHSPSPKPSN NSSSNNNSIA RNISFHGLNG VQTSCYEPTS VLDLRRSPSP  60
VPEKPVTNSA DVSNCISSDP HHHQAPALEW DEHVLRTMDW DSIMKDLGLD DESVPAIKTI  120
NPQAISPCEN QIQSLPEFSS CELTHQSVHS DFNNLYDFYS EELIRAADCF DTNELQLAHV  180
ILARLNQRLR SPSGKPLQRA AFYFKEALQS LLTGSTRSTR LSSWSEIVQT IKAYKAFSGI  240
NPIPMFNHFT TNQALLEALD GSAPLIHIID FDIGLGGQYA SLMREMAERN DHSCKFIRIT  300
AVVPEEYAIE TRLIKDNLFQ FAQDLKIRFQ IEFVLLRTFE MLSLKAFKFI DGEKTAILLS  360
PSIFRCLSLN VAAFLSDLRR VNPSVVVFVD SEVWMESGTT SFRKNFVNGL EFYAMMFESL  420
DAAVVGGEWV RKIETLLLRP RILVAVEAAA RRTAPPWREL FVGAGMRAVH LSQFADFQAE  480
CLLGKVQNPA MAFLGSNVAS GVGLRLLLCP LGSNIVTRAA CCSVGIVLPV YSTFRAIERN  540
DENEQQKWLT YWAAYGSFTI VEVFSDKLLS WFPYYYHFKF VFLVWLQLPS TEGAKRIYKN  600
HLRPFLLRHQ AKVDELMGFA CAEMARFVST HQEEFRFVRI MFRKMTGSAD TKVTGPAEPD  660
KPRGLPEIEG QTRMISNPES DHNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-139GRAS family protein