PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021300301.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24280.2 Da PI: 5.2589 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.4 | 4e-23 | 15 | 58 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++s rqvtfskRrng++KKA+EL+vLC+a++ +i+fs++gk XP_021300301.1 15 KLEDESSRQVTFSKRRNGLFKKASELCVLCGANIGIIVFSPRGK 58 6799***************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MAKATRGRQK IQIKKLEDES SRQVTFSKRR NGLFKKASEL CVLCGANIGI IVFSPRGKPF 60 CFGHPNVDAV VDRYLSGNPT LHGEEDSETS CDGTPCFEEL DEECKEAMEK LEEEKRRSKE 120 IEKEKEERKK KGQFWWDEPI DNMGVEELEA YVKAMEELRK NVARRANELM GDVLAAATVA 180 NSGGLGTGFA DQNGGFGYGY DGFHFGHGHG LDFGGGQF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 131 | KRRSKEIEKEKEERKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 9e-38 | M-type_MADS family protein |