PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021300270.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 359aa    MW: 42346.3 Da    PI: 4.6333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021300270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-179101197
                     EEEE-..-HHHHTT-EE--HHH.H.TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfae.ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv +p +++++  +++p + +  ++g+++  + t t+++ +g+ W v++  +k++gr++++kGW++F ++n +ke D++vF+++g s f  +v
  XP_021300270.1   9 FFKVYLPRYSFER--MSIPPTAVVcSNGLVP-MPATATFRNCKGQCWHVEV--NKCDGRMFFEKGWRRFIDDNSIKEEDILVFSYVGCSVFDVKV 98 
                     8999999999987..7***999641558875.889****************..********************************9988887777 PP

                     EEE CS
              B3  95 kvf 97 
                       f
  XP_021300270.1  99 YGF 101
                     665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MSNFEAKNFF KVYLPRYSFE RMSIPPTAVV CSNGLVPMPA TATFRNCKGQ CWHVEVNKCD  60
GRMFFEKGWR RFIDDNSIKE EDILVFSYVG CSVFDVKVYG FDGCEKSVSY LVEEGESGEE  120
QGQEDDEEED YNYQEEGEDS VLEMDDDDDD YGYLEEGEDS ELEMEKEEEN EEVLDTLTNR  180
GCQRNINKRN SGRHEGLAAV NDEETTSMEV EYEELNPERY VHELNPYFVA RRRLGRWNEL  240
YVPSTVIRDY DLILEDEQEI TFLDPYDRKK IGKVRKWKDR RTCIMGWRSV CNRNRVNRER  300
DVCICEFLLD NENGQKPKFM RVHIIRGKHT KSQKPTLKHY QKKHSDKTLP AMKSKMLLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-15B3 family protein